YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MCD1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASIDSLQFH SLCNLQSSIG RAKLQNPSSL VIFRRRPVNL NWVQFETKGS FVCKAIGDSS  60
   61 TPDEDIQNTQ SDDNVVVVTA TTQSDIPHDS EYSISRFRSM VTTLPPVVFL MKKCSVNSIW 120
  121 IGVCITATVL VAAIRAYVVR KSRDNQRAGS VADLVRRGQL RSGDRRGISK SLNYEDPFNN 180
  181 PFVKLDKGSS TVEMCGKVYR LAPVTLTEKE QTIHQKRRSR AYQWKRPTIF LKEGDSIPPD 240
  241 VDPDTVRWIP ANHPFATTVS DIDQDLAQNN VYQKQGVPFR IRAEHEAMQK KLEALQNEEK 300
  301 LNNLSIDSQN ARDFQRPYKF SAKLEGENIQ KNSQENHTGN SSSEETHKS

Type	Start	End	Confidence
Cytoplasmic	1	117	0.67
Transmembrane Helix	118	138	0.81
Non-Cytoplasmic	139	349	0.79