YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42572787, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSILCCVPVL ECVYCLGCTH WLWKKCLYSA GHESENWGLA TSDEFEPIPR ICRLILAVYE  60
   61 ENLHDPMWAP PDGYGIDPNH VILKKDYDQT EGRVTPYMIY LDHENGDVVL AIRGLNLAKE 120
  121 CDYAVLLDNK LGQTKFDGGY VHNGLLKAAM WVFEEEHVVL RELLEANPSY SLTFVGHSLG 180
  181 AGVVSLLVLF VIQNRVRLGN IERKRIRCFA IAPPRCMSLH LAVTYADVIN SVVLQDDFLP 240
  241 RTTTALENVF KSIICLPCLL CLTCLKDTFT FEERKLKDAR RLYAPGRLYH IVVRKPLRLG 300
  301 RYPPVVRTAV PVDGRFEQIV LSCNATADHA IIWIERESQR ALDLMVEEDQ VMQIPVEQKI 360
  361 VRQKSIVEDH DEEYRAAIMK AASLNIPMSP SPSYGTFHDT EEGESSAGSG MEGSPSGWSF 420
  421 KGMRRKWDQF IDCHFPVNDN SEHMIFKNQE SQALLCGQET

Type	Start	End	Confidence
Non-Cytoplasmic	1	172	0.78
Transmembrane Helix	173	193	0.75
Cytoplasmic	194	210	0.53
Transmembrane Helix	211	226	0.32
Non-Cytoplasmic	227	460	0.60