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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NUP62_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.41
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGFPFGQSN SVGGFSFGSS SATNSSSASS TTSPLSFSFN QSSNPSSTGF GFGSSVSSTP  60
   61 ASSTTPSFGF GASSTPSFGF GSSASSSTPS FGFGSSASVT PASTTPSFGF GTAASSSAPA 120
  121 PSLFGSSTTN ASSAAPGSSP FGFVTSSASS TATPSSSLFG APASSAATPS SSPFGAAPAS 180
  181 GSTPLFGSSP SLFSAPSSAS ASNSSLFGAS SSAATSTSPL FGAPSSATGA TPSFSVASSA 240
  241 PGSSSSIFGA TGSSPSFSVA SSASGSSPSI FGATGSSPFF GSSSSAGSTP SLFASSSSGA 300
  301 TTSSPSPFGV STFNSSSTSN TSNASASPFS ASTGFSFLKS TASSTTSSTT PSAPPQTASS 360
  361 SSSFSFGTSA NSGFNLSTGS SAAPASSTSG AVFSIATTTT TSSSTPAATS APASSAPAST 420
  421 MAFPSFGVTS SATNTTPASS AATFSTTGFG LASSTPATGS TNSFTGFAVP KTSTPASSSQ 480
  481 PQTTSPAFSF SLPSSTSTTA PATSSATTTQ TTLVVPSSSG TSTAVAPVAG SPKLPSEITG 540
  541 KTVEEIIKEW NTELQERTGR FRKQANAIAE WDKRILQNRD VLLRLEIEVA KVVETQSSLE 600
  601 RQLELIETHQ QEVDKALQSM EEEAERIYND ERKSLLDDEA ASTRDAMYEQ SELVERELEH 660
  661 MTEQIRSIIQ SVNANQGGEL EAIDGMSPLD VVVRILNNQL SSLMWIDEKA EEFSSRIQKI 720
  721 ALQGSGGDRE LMAPKHWMS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle