YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TPC1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	64	0.95
Transmembrane Helix	65	84	0.84
Non-Cytoplasmic	85	119	0.90
Transmembrane Helix	120	141	0.87
Cytoplasmic	142	151	0.92
Transmembrane Helix	152	174	0.90
Non-Cytoplasmic	175	213	0.64
Transmembrane Helix	214	236	0.88
Cytoplasmic	237	243	0.54
Transmembrane Helix	244	264	0.69
Non-Cytoplasmic	265	283	0.77
Transmembrane Helix	284	305	0.93
Cytoplasmic	306	430	0.84
Transmembrane Helix	431	453	0.85
Non-Cytoplasmic	454	468	0.71
Transmembrane Helix	469	486	0.84
Cytoplasmic	487	498	0.75
Transmembrane Helix	499	517	0.69
Non-Cytoplasmic	518	528	0.60
Transmembrane Helix	529	544	0.59
Cytoplasmic	545	557	0.61
Transmembrane Helix	558	585	0.78
Non-Cytoplasmic	586	615	0.76
Transmembrane Helix	616	635	0.74
Cytoplasmic	636	646	0.64
Transmembrane Helix	647	672	0.83
Non-Cytoplasmic	673	733	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDPLIGRDS LGGGGTDRVR RSEAITHGTP FQKAAALVDL AEDGIGLPVE ILDQSSFGES  60
   61 ARYYFIFTRL DLIWSLNYFA LLFLNFFEQP LWCEKNPKPS CKDRDYYYLG ELPYLTNAES 120
  121 IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD 180
  181 FLPFRIAPYV RVIIFILSIR ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED 240
  241 TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI 300
  301 LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL 360
  361 PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ KEEVPSLFEH FPQIYHSALS 420
  421 QQLRAFVRSP NFGYAISFIL IINFIAVVVE TTLDIEESSA QKPWQVAEFV FGWIYVLEMA 480
  481 LKIYTYGFEN YWREGANRFD FLVTWVIVIG ETATFITPDE NTFFSNGEWI RYLLLARMLR 540
  541 LIRLLMNVQR YRAFIATFIT LIPSLMPYLG TIFCVLCIYC SIGVQVFGGL VNAGNKKLFE 600
  601 TELAEDDYLL FNFNDYPNGM VTLFNLLVMG NWQVWMESYK DLTGTWWSIT YFVSFYVITI 660
  661 LLLLNLVVAF VLEAFFTELD LEEEEKCQGQ DSQEKRNRRR SAGSKSRSQR VDTLLHHMLG 720
  721 DELSKPECST SDT