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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PMTT_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMPLQRGIS GVRVSDSSDD LRDSQMKDKT ERARSTENNN LTLRFPFGFL FSNQSSSKHG  60
   61 GGGENGFSAD PYSARSRHRL MLLFLKISLV LIVVIALAGS FWWTISISTS SRGHVYHNYR 120
  121 RLQEQLVSDL WDIGEISLGP NRWKELEYCN IESENFVPCF NVSENLALGY SNGDENDRFC 180
  181 GPGSKQECLE LPPVKYRVPL RWPTGKDIIW HSNVKITAQE VVSSGSITKR MMMMEDDQIS 240
  241 FRSASPMSDE VEDYSHQIAE MIGIKKDNFI EAGVRTILDI GCGYGSFGAH LLSKQILTMC 300
  301 IANYEASGSQ VQLTLERGLP AMIGSFISKQ LPYPSLSFDM LHCLRCGIDW DQKDGLLLVE 360
  361 IDRVLKPGGY FVWTSPLTNP RNKDHLKRWN FVHDFAESIC WTLLNQQDET VVWKKTINTK 420
  421 CYSSRKPGVG PSVCTKGHDV ESPYYRPLQM CIGGTRSRRW IPIEGRTRWP SRSNMNKTEL 480
  481 SLYGLHPEVL GEDAENWKIT VREYWSLLSP LIFSDHPKRP GDEDPSPPYN MLRNVLDMNA 540
  541 QFGGLNSALL EARKSVWVMN VVPTAGPNHL PMILDRGFVG VLHNWCEPFP TYPRTYDLVH 600
  601 ADNLLSLQTS QPRKTCLLID IFTEIDRLLR PEGWVIIRDT AQLVEKARET ITQLKWEARV 660
  661 IEVESSSEQR LLICQKPFTK RQSI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle