YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YSL4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.97
Transmembrane Helix	35	57	0.85
Non-Cytoplasmic	58	62	0.69
Transmembrane Helix	63	84	0.87
Cytoplasmic	85	102	0.84
Transmembrane Helix	103	126	0.86
Non-Cytoplasmic	127	150	0.96
Transmembrane Helix	151	173	0.90
Cytoplasmic	174	225	0.78
Transmembrane Helix	226	246	0.73
Non-Cytoplasmic	247	262	0.56
Transmembrane Helix	263	292	0.78
Cytoplasmic	293	312	0.59
Transmembrane Helix	313	334	0.62
Non-Cytoplasmic	335	388	0.43
Transmembrane Helix	389	409	0.86
Cytoplasmic	410	413	0.43
Transmembrane Helix	414	437	0.72
Non-Cytoplasmic	438	456	0.59
Transmembrane Helix	457	482	0.80
Cytoplasmic	483	501	0.71
Transmembrane Helix	502	524	0.92
Non-Cytoplasmic	525	557	0.75
Transmembrane Helix	558	579	0.89
Cytoplasmic	580	597	0.61
Transmembrane Helix	598	621	0.81
Non-Cytoplasmic	622	634	0.72
Transmembrane Helix	635	657	0.81
Cytoplasmic	658	670	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METEIPRSTE ISETLLLPET NLDHGEYVPE WKEQITIRGL ISSALLGILF CIITHKLNLT  60
   61 IGIIPSLNVA AGLLGFFFIK SWTGFLSKLG FLSKPFTKQE NTVIQTCVVS CYGLAYSGGF 120
  121 GSYLIAMDER TYKLIGSDYP GNNPEDVINP GLWWMTGFLF VVSFLGLFCL VPLRKVMILD 180
  181 YKLTYPSGTA TAMLINSFHN NTGAELAGKQ VKCLGKYLSL SLVWSCFKWF FSGIGGACGF 240
  241 DHFPTLGLTL FKNTFYFDFS PTFIGCGMIC PHLVNCSVLL GAIISWGFLW PFISQHAGDW 300
  301 YPADLKANDF KGLYGYKVFI AISIILGDGL YNLIKIIVVT VKEICNKSSR QHNLPVFTDI 360
  361 LDKSKTSVLM REKKKRDIIF LKDRIPLEFA VSGYVGLAAI STAIIPLIFP PLKWYFVLCS 420
  421 YLVAPGLAFC NSYGAGLTDM SMPSTYGKTG LFIVASIVGN NGGVIAGLAA CGIMMSIVST 480
  481 AADLMQDFKT GYLTLSSAKS MFVTQLLGTA MGCIIAPLTF WLFWTAFDIG DPDGLYKAPY 540
  541 AVIYREMAIL GVEGFAKLPK HCLALCCGFF IAALIVNLIR DMTPPKISKL IPLPMAMAGP 600
  601 FYIGAYFAID MFVGTVIMLV WERMNKKDAD DYSGAVASGL ICGDGIWTIP SAILSILRIN 660
  661 PPICMYFRPS