YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATL17_ARATH
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTTTILILL IVILMVSLHL YYRWYLLRSS PFNRTTAAST FFTDPSSTPG GLNPSIIKSL  60
   61 PIFTFSAVTA LFAMECSVCL SEFKDNESGR VMPNCKHTFH VHCIDMWFHS HSSCPLCRSQ 120
  121 IEPFAGGVKS SMDEVAISIS DPVYGDTNHH EGTETTGDSV PEDSQRKPAA IEISQRNLGE 180
  181 IENDLSRSHS FRSPTDEPDD IFHSEFESRS GEVLLLLLLL SEFLIFCFRR SVACK

Type	Start	End	Confidence
Cytoplasmic	1	5	0.39
Transmembrane Helix	6	25	0.63
Non-Cytoplasmic	26	212	0.73
Transmembrane Helix	213	232	0.50
Cytoplasmic	233	235	0.57