YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22325475
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.95
Transmembrane Helix	59	77	0.89
Non-Cytoplasmic	78	87	0.78
Transmembrane Helix	88	112	0.86
Cytoplasmic	113	141	0.79
Transmembrane Helix	142	158	0.83
Non-Cytoplasmic	159	164	0.62
Transmembrane Helix	165	185	0.89
Cytoplasmic	186	196	0.86
Transmembrane Helix	197	214	0.94
Non-Cytoplasmic	215	238	0.90
Transmembrane Helix	239	257	0.94
Cytoplasmic	258	276	0.89
Transmembrane Helix	277	297	0.95
Non-Cytoplasmic	298	356	0.65
Transmembrane Helix	357	379	0.76
Cytoplasmic	380	419	0.90
Transmembrane Helix	420	440	0.91
Non-Cytoplasmic	441	449	0.72
Transmembrane Helix	450	469	0.92
Cytoplasmic	470	486	0.89
Transmembrane Helix	487	506	0.93
Non-Cytoplasmic	507	521	0.75
Transmembrane Helix	522	541	0.96
Cytoplasmic	542	658	0.98
Transmembrane Helix	659	680	0.93
Non-Cytoplasmic	681	686	0.82
Transmembrane Helix	687	708	0.88
Cytoplasmic	709	798	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDHHHHHHH QHRPNRLSVP QPTIGRTYPS FPYTPTPTPS KTRLSSSSSY RSIHGSKSSL  60
   61 SFLFLILFSL RSLYSLLPFL RSSPSFSLFP FSFLVSLLSF LFSLSFTIIS SFSPSKKDPF 120
  121 LLRLQNRSFS SISSLSSSQI KLLLAKSFLL AFVFLLRFQA LRYCGAAAMI LAELSGTVSA 180
  181 RVLFSDTGGI GVRSSKVRGF CVLFAGLLLL SISWDRVDCF PFSSSVESWG FWIYPKENCL 240
  241 RIWPLLLPFL SGFLGCYEKV SVNWNEIKQL DQKRVRLLSL FLTTVLLFPL AIWSFFFSGS 300
  301 GDDSVSFGNL GWPLANTVVF GVLLSENYND DKFSSSKKKD SEREFLVTFL CTIVLELFYF 360
  361 PELSLWGLLL CGLLLYIAVR ELESVYSDYQ EIGMESPESF STMFMKPIRH ILSEKKSRKI 420
  421 ALFLLINTAY MVVEFVAGFM SNSLGLISDA CHMLFDCAAL AIGLYASYIS RLPANHQYNY 480
  481 GRGRFEVLSG YVNAVFLVLV GALIVLESIE RILDPQEIST NSLLVVSVGG LLVNIVGLIF 540
  541 FHEEHHHAHG GSGCTHSHSH QSHSHKNEEH HQHSDSHKHE EHHQHSDSHK HEEHHEHDHH 600
  601 HHSHSHKHEE CNHNHDHEHQ SHSHNHEECN HNHDHHSDHQ PEKSEKKEHR HIDHNMEGIF 660
  661 LHVLADTMGS VGVVISTLLI KYKGWLVADP ASSIFISILI IASVIPLLRN SAEILLQRVP 720
  721 RAHRQDLKEA MRNILKTKGV CSIQRLHVWS FTNSDVVATL HLLVSADSDK TDTKLQVSRL 780
  781 LEDAGVKDWT LQVESVNS