YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149022788, gi...
Organism:	Rattus norvegicus
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149022788, gi....

Description	E-value	Query Range	Subject Range
gi\|50749126 - gi\|50749126\|ref\|XP_421495.1\| PREDICTED: similar to PDZ-LIM protein cypher1s [Gallus gallus]	145.0	[0..2]	[149..668]
gi\|39579749, gi\|... - gi\|39579749\|emb\|CAE56517.1\| Hypothetical protein CBG24239 [Caenorhabditis briggsae], gi\|187040350\|em...	143.0	[0..4]	[147..1511]
gi\|114647257 - gi\|114647257\|ref\|XP_001159746.1\| PREDICTED: paxillin isoform 2 [Pan troglodytes]	143.0	[0..6]	[157..357]
gi\|73995303 - gi\|73995303\|ref\|XP_543425.2\| PREDICTED: similar to Paxillin [Canis familiaris]	143.0	[0..6]	[157..466]
alp-1 - LIM domains status:Partially_confirmed UniProt:Q17878 protein_id:CAA90991.1	142.0	[0..4]	[147..1286]
gi\|47217571 - gi\|47217571\|emb\|CAG02498.1\| unnamed protein product [Tetraodon nigroviridis]	142.0	[0..6]	[157..943]
gi\|3327040 - gi\|3327040\|dbj\|BAA31588.1\| KIAA0613 protein [Homo sapiens]	141.0	[0..2]	[149..589]
gi\|109089097 - gi\|109089097\|ref\|XP_001085158.1\| PREDICTED: similar to LIM domain binding 3 isoform 2 [Macaca mulatt...	141.0	[0..2]	[149..580]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAIERKSL DPSEEPVDEV LQIPPSLLTC GGCQQNIGDR YFLKAIDQYW HEDCLSCDLC  60
   61 GCRLGEVGRR LYYKLGRKLC RRDYLRLFGQ DGLCASCDKR IRAYEMTMRV KDKVYHLECF 120
  121 KCAACQKHFC VGDRYLLINS DIVCEQDIYE WTKINGII

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.045757
Match:	2dfyX
Description:	No description for 2dfyX was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits