YRC Public Data Repository - Protein Structure Prediction

Protein:	EXOS6_MOUSE
Organism:	Mus musculus
Length:	273 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EXOS6_MOUSE.

Description	E-value	Query Range	Subject Range
PNP_CARHZ - Polyribonucleotide nucleotidyltransferase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 ...	310.0	[0..5]	[272..304]
PNP_BACLD - Polyribonucleotide nucleotidyltransferase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JC...	304.0	[0..5]	[272..294]
PNP_MOOTA - Polyribonucleotide nucleotidyltransferase OS=Moorella thermoacetica (strain ATCC 39073) GN=pnp PE=3 ...	303.0	[0..1]	[272..305]
PNP_GEOKA - Polyribonucleotide nucleotidyltransferase OS=Geobacillus kaustophilus GN=pnp PE=3 SV=1 PNP_GEOKA - Polyribonucleotide nucleotidyltransferase OS=Geobacillus kaustophilus (strain HTA426) GN=pnp PE=3 SV...	302.0	[0..5]	[272..294]
PNP_IDILO - Polyribonucleotide nucleotidyltransferase OS=Idiomarina loihiensis GN=pnp PE=3 SV=1 PNP_IDILO - Polyribonucleotide nucleotidyltransferase OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 ...	301.0	[0..3]	[272..290]
PNP_CALS4 - Polyribonucleotide nucleotidyltransferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (str... PNP_THETN - Polyribonucleotide nucleotidyltransferase OS=Thermoanaerobacter tengcongensis GN=pnp PE=3 SV=1	301.0	[0..4]	[272..290]
PNP_GEOSL - Polyribonucleotide nucleotidyltransferase OS=Geobacter sulfurreducens GN=pnp PE=3 SV=1 PNP_GEOSL - Polyribonucleotide nucleotidyltransferase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127...	301.0	[0..4]	[272..290]
gi\|251810705, gi... - gi\|251810705\|ref\|ZP_04825178.1\| polynucleotide phosphorylase/polyadenylase [Staphylococcus epidermid... PNP_STAES - Polyribonucleotide nucleotidyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pnp P... PNP_STAEQ - Polyribonucleotide nucleotidyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) ...	301.0	[0..4]	[272..296]
PNP_BACSU - Polyribonucleotide nucleotidyltransferase OS=Bacillus subtilis GN=pnp PE=1 SV=3 gi\|221313871 - gi\|221313871\|ref\|ZP_03595676.1\| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp.... gi\|221318794 - gi\|221318794\|ref\|ZP_03600088.1\| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp.... gi\|221323066 - gi\|221323066\|ref\|ZP_03604360.1\| polynucleotide phosphorylase/polyadenylase [Bacillus subtilis subsp.... PNP_BACSU - Polyribonucleotide nucleotidyltransferase OS=Bacillus subtilis (strain 168) GN=pnp PE=1 SV=3	301.0	[0..5]	[272..294]
PNP_LISIN - Polyribonucleotide nucleotidyltransferase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=pnp ... PNP_LISIN - Polyribonucleotide nucleotidyltransferase OS=Listeria innocua GN=pnp PE=3 SV=1	300.0	[0..3]	[272..293]

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Predicted Domain #1

Region A:
Residues: [1-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGDHRRIRG PEESQPPQLY AAEDDETPAA RDPTRLRPVY ARAGLLSQAK GSAYLEAGGT  60
   61 KVLCAVSGPR QAEGGERGSG PAGAGGEAPA ALRGRLLCDF RRAPFSGRRR RAPQGGGGED 120
  121 RELGLALQEA LEPAVRLGRY PRAQLEVSAL LLEDGGCALA AALTAAALAL ADAGVEMYDL 180
  181 VVGCGLSLTP GPSPTWLLDP TRLEEEHSAA GLTVALMPVL NQVAGLLGSG EGGQTESWTD 240
  241 AVRLGLEGCQ RLYPVLQQCL VRAARRRGAA APP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.0
Match:	2nn6F
Description:	No description for 2nn6F was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.112026646106867	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: