YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2137803, gi\|7...
Organism:	Mus musculus
Length:	189 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2137803, gi|7....

Description	E-value	Query Range	Subject Range
TC1D3_MOUSE - Tctex1 domain-containing protein 3 OS=Mus musculus GN=Tcte3 PE=1 SV=2	298.0	[0..1]	[189..1]
gi\|34854128 - gi\|34854128\|ref\|XP_344847.1\| PREDICTED: similar to t-complex-associated testis expressed 3 isoform 1...	278.0	[0..1]	[189..1]
gi\|109073345 - gi\|109073345\|ref\|XP_001084185.1\| PREDICTED: similar to t-complex-associated-testis-expressed 3 [Maca...	257.0	[0..1]	[189..1]
TCTE3 - t-complex-associated-testis-expressed 3	256.0	[0..1]	[189..1]
gi\|114610289 - gi\|114610289\|ref\|XP_001138699.1\| PREDICTED: t-complex-associated-testis-expressed 3 [Pan troglodytes...	254.0	[0..1]	[189..1]
gi\|73974041 - gi\|73974041\|ref\|XP_532273.2\| PREDICTED: similar to t-complex-associated-testis-expressed 3 [Canis fa...	245.0	[0..1]	[189..1]
gi\|2760163 - gi\|2760163\|dbj\|BAA24185.1\| outer arm dynein light chain 1 [Anthocidaris crassispina]	193.0	[0..29]	[189..14]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERRGRMAKT PTGQTHESPV SKSERRPSMF EKESYAQILR PRESFRDVQF VEPPFDDAIA  60
   61 DSGKEWKSAL AKLKFANSYR ME

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [83-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLKKFQAHSV ETKIQQILKD SLKDVKYDDK APHLSLELAD RILAAVKEFA YHRYKFIIQV  60
   61 LFIQKTGQGI NIASRWIWDV AWDNWVEAKH ETESYVVLAL VFALYCE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	1ygtA
Description:	Dynein Light Chain TcTex-1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits