YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2137803, gi\|7...
Organism:	Mus musculus
Length:	189 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2137803, gi|7....

Description	E-value	Query Range	Subject Range
TC1D3_MOUSE - Tctex1 domain-containing protein 3 OS=Mus musculus GN=Tcte3 PE=1 SV=2	298.0	[0..1]	[189..1]
gi\|34854128 - gi\|34854128\|ref\|XP_344847.1\| PREDICTED: similar to t-complex-associated testis expressed 3 isoform 1...	278.0	[0..1]	[189..1]
gi\|109073345 - gi\|109073345\|ref\|XP_001084185.1\| PREDICTED: similar to t-complex-associated-testis-expressed 3 [Maca...	257.0	[0..1]	[189..1]
TCTE3 - t-complex-associated-testis-expressed 3	256.0	[0..1]	[189..1]
gi\|114610289 - gi\|114610289\|ref\|XP_001138699.1\| PREDICTED: t-complex-associated-testis-expressed 3 [Pan troglodytes...	254.0	[0..1]	[189..1]
gi\|73974041 - gi\|73974041\|ref\|XP_532273.2\| PREDICTED: similar to t-complex-associated-testis-expressed 3 [Canis fa...	245.0	[0..1]	[189..1]
gi\|2760163 - gi\|2760163\|dbj\|BAA24185.1\| outer arm dynein light chain 1 [Anthocidaris crassispina]	193.0	[0..29]	[189..14]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERRGRMAKT PTGQTHESPV SKSERRPSMF EKESYAQILR PRESFRDVQF VEPPFDDAIA  60
   61 DSGKEWKSAL AKLKFANSYR ME

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.407	N/A	N/A	a.144.2	Ribosomal protein L20
View	Download	0.222	N/A	N/A	a.144.1	PABC (PABP) domain

Predicted Domain #2

Region A:
Residues: [83-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLKKFQAHSV ETKIQQILKD SLKDVKYDDK APHLSLELAD RILAAVKEFA YHRYKFIIQV  60
   61 LFIQKTGQGI NIASRWIWDV AWDNWVEAKH ETESYVVLAL VFALYCE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	1ygtA
Description:	Dynein Light Chain TcTex-1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits