| Protein: | FBpp0309007 |
| Organism: | Drosophila melanogaster |
| Length: | 1945 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBpp0309007.
| Description | E-value | Query Range |
Subject Range |
|
|
805.0 | [0..1] | [1666..1] |
|
Region A: Residues: [1-148] |
1 11 21 31 41 51
| | | | | |
1 MEQLFQNYRD DERRIGEEYL SSLQDLNCNS KPLINMLTML AEENINYAHI IVKVVEYYIS 60
61 QVAPEFKLPI LYLIDSIVKN VKSSYVQLFG QCIVNIFLHA FESVQHSQSQ VLEKVRERMY 120
121 ALRQTWNEVF PPSKMYALDV KVKRLDNN
|
| Detection Method: |  |
| Confidence: | 32.522879 |
| Match: | 1sz9A |
| Description: | The RNA polymerase II CTD in mRNA processing: beta-turn recognition and beta-spiral model |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.32938736470587 | bayes_pls_golite062009 |
| transcription regulator activity | 1.23669539775752 | bayes_pls_golite062009 |
| protein binding | 1.06982968862424 | bayes_pls_golite062009 |
| nucleic acid binding | 1.0577402512508 | bayes_pls_golite062009 |
| DNA binding | 0.977216329931465 | bayes_pls_golite062009 |
| transcription factor activity | 0.41747784195632 | bayes_pls_golite062009 |
|
Region A: Residues: [149-357] |
1 11 21 31 41 51
| | | | | |
1 WPITAKQPTN KIHVNPAIHV NPDFLKPGLV PGMPGNPTIT SDMEEILQAK TRELLELKKR 60
61 KLELELEQTK KHLEEQERQL TQTTDAMVGA PIIMPAPTPA AICPPITDPG IAVHNQRAPG 120
121 VMGNVGPVMH NMPVAPQLFA NKPKVHPVNP ALLNSVRQRD PRLARQMHAA SSHPAAPARN 180
181 DPRLEAKSSS SQKSSRSRSK SPVRNSSSR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [358-421] |
1 11 21 31 41 51
| | | | | |
1 SGKSGSSSHS SSSSRKRSES KSSTTSSSSS SSDVRHKGVT ASSSNQPTVK RSGKITSKDS 60
61 DRYV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [422-486] |
1 11 21 31 41 51
| | | | | |
1 RNGSPLGSAK RKSSSPSSSP SKSKRSTSHK SSSSRGKTSS LRSRSRSPVF MDVDLRTGVR 60
61 SKSPE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [487-685] |
1 11 21 31 41 51
| | | | | |
1 SRAVAPSSLP LAGASLPASA KAPKDLEKRH PPAPPSPPII DVSSMDIDLR RPKTPPPPTF 60
61 DSVDSLDQKD TTSGHISSTI IQASGASNAS PSGASTSKLP AKVSFKIQKQ FNKLEKSTAN 120
121 LSTVSMLNSN PTTSGTPAAS LVRQSSPSPS SSSISSQGNV SDALQLSINK LLQVQGGAGE 180
181 KRPADALPPH IDGEEQPPQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [686-934] |
1 11 21 31 41 51
| | | | | |
1 QKRSKSAKLD ALFGSEDVDL RREILVVKPG VIVVEDDSMD ECDVDKPTKK SGSPPKKATL 60
61 EELRAKLANS ARIQNKQGKS DKSRDQAVSQ RLKQLAELKV NDDSQEAHDE KVRTILSQAQ 120
121 EMYENNGMNQ EQYKDLVQKV VAINENSKIK ESRRRDNDLE RNAARDAVLR KRIPKLKGNE 180
181 NHSAGSPHTD GSPRYDDQPA AAPEKPSNKR DKTKREMKRR KPTKWGEQVD AGAAQRTAWQ 240
241 LANVNNNNN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [935-1030] |
1 11 21 31 41 51
| | | | | |
1 NNNNKRGGIQ LPVQPQAGFR GMPWQQPPAM VLGQSAVPPP PQPPSMISMP PVPPVTMTKA 60
61 INSLDNPMAD VVRSITIDGG SKEIRFYNQV AIIFMD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1031-1217] |
1 11 21 31 41 51
| | | | | |
1 GDQPHEIGFQ PGQRVIFIDH NEPLPLCFND DYKPFHLDGQ LHRIRFGFPS RELYIDEHWY 60
61 EIYFGGPAVS VPIGNKLHII KAEGPPPNVD IGRVRRDLVV GKINMIADAH TIVPLFLDAR 120
121 QQTFQLGAEQ HSLQFVDSFQ YALLDGQLQK MEYGGLPKGM MLNGGRSCFI RFGTLPKGVI 180
181 AGKTHVA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1218-1393] |
1 11 21 31 41 51
| | | | | |
1 DMVYIKTDAP AEPPKPPPII VKPPPVVEQP KPAPVAVAPI SLPAAAAALE SLNINDLFQK 60
61 LVSSGIIGGA TAAPTLPAAD SSAAKEPTAS ATEPSTASAT VAPATLPAGP PAEPIKRIDL 120
121 RKPESIKTRQ AAVVAVLYLG MQCSSCGVRF PPEQTIKYSQ HLDWHFRQNR RERDST
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1394-1511] |
1 11 21 31 41 51
| | | | | |
1 RKATSRKWYY DLNDWRQYEE IEDVEEREKN FLEAQGQPGG VEALDELSQQ RSLDSPVPTC 60
61 AAGRDDVDHC CDMCHEKFEQ FYNEELEEWH LRSAIRVEDK IYHPLCYEDY KASLNPPT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1512-1666] |
1 11 21 31 41 51
| | | | | |
1 EVKSDQDVDM NNTDDNAMDT LIKVEDDEDE GTPNSSQPIF EDDDDDVIVL PNEEPSVTEI 60
61 VDDDDEDEYV PGNVTRADMG NESQDKTESN SETKEPKKDQ VELGEQQQNE SANESDVEIQ 120
121 EPNIPFTDLD TYVEKEMDEA TRAALLNVKI KEEPK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1667-1817] |
1 11 21 31 41 51
| | | | | |
1 DEYEEDEDDG FEDVGTVVSL LPLPEDEISI HSSETQTHTI GSSASPATIE RPASVTSLSL 60
61 PANEADELEQ GDANTDTDAE LNGEKQEATH NLSAVGPALP LASIVNKIKI NITKNTSSNS 120
121 HNSASNTTTT DSQVSAISVI GGSGAAGGAS G
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1818-1945] |
1 11 21 31 41 51
| | | | | |
1 AGDPVQQVNA IQTISTIPVL CGGNTFVPKI ATSTPSNVIS SISVIGSTYG ASSSSNGSRS 60
61 TTSTASSAPA ASLLAETGSL KSPTPPLATV DPDPEPVVEQ KPALRNATLK RTKKVQNGIE 120
121 TSGLCSIM
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
