| Protein: | Ptr-PA, FBpp0298... |
| Organism: | Drosophila melanogaster |
| Length: | 1169 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Ptr-PA, FBpp0298....
| Description | E-value | Query Range |
Subject Range |
|
|
546.0 | [0..375] | [1168..11] |
|
Region A: Residues: [1-198] |
1 11 21 31 41 51
| | | | | |
1 MTCGISCVDK TLNKSFYHLG ICIAKHPGYF IIIPVLLTLL CMTGYQQLKY QIDPEYLFSP 60
61 IAGEGKTERA IVEQYFKVNY THRFNVGRIT RPGRFGRVIV ITKDGDENMI RREVFQELRQ 120
121 LDNIIQNATT TYDGDTYTYK DNCARWENEC FENDILNLDA LMDDIEAGQL NLTFPFMFNP 180
181 VTWDAHLFPV FFGGTKLT
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [199-372] |
1 11 21 31 41 51
| | | | | |
1 EDNYVISVPA IQLVYFVTAD TKRQDAKGAE WEETFLRVVG NAENSGQFKH ISVSYFASRT 60
61 LDHELEKNTK TVVPYFSSTF LLMGLFSIIT CMMGDAVRSK PFLGLMGNVS AIMATLAAFG 120
121 LAMYCGIEFI GINLAAPFLM IGIGIDDTFV MLAGWRRTKA KMPVAERMGL MMSE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [373-1169] |
1 11 21 31 41 51
| | | | | |
1 AAVSITITSV TDFISFLIGI ISPFRSVRIF CTYSVFAVCF TFLWHITFFA ACMAISGYRE 60
61 RKNLHSIFGC RVQPMSVAIK EKRNFLYKAI MAGGIDANDP DNPIDNKDHM LMAFFKDKMA 120
121 AVINNKWCKA IIILAFASYL VGACYGITQI KEGLERRKLS REDSYSVEFF DREDDYYREF 180
181 PYRMQVIIAG PLNYSDPLVQ EQVENLTSTL EHTSYVTSRR YTESWLRSFL SFLERNNELL 240
241 NVTVDDEQTF IDAVKEHWLF PGNPFSLDVR FNEDETQIIA SRFLIQAVNI TDTNHEKEMV 300
301 RDLRQICKDS PLNASIFHPY FVFFDQFELV RPVSLQAMVI GAIIMMIISF VFIPNILCSL 360
361 WVAFSVISIE LGVAGYMALW DVNLDSISMI NLIMCIGFSV DFTAHICYTY MSSKKRSPKA 420
421 RVREALHSLG LPIIQGSSST ILGIVALLLA QSYIFLVFFK MVFLVIFFGA MHGLFLLPVL 480
481 LSLFGPGSCL TWTGKDDGSD AEVDDGLDDR QLEKPFSQSY YMQYPSIGIN GPYGSKGFLG 540
541 APYKAYGVDE KDLGLGTSGE DSSESSSSRS QHRQQAAATE EEVVVRESPT RRYDDGWRRS 600
601 SYQNIYGQGA AQFQAQPDLY GKQVSATEWR QRLDTHEQQQ RQRQRRSPFE NYRQDVEIDM 660
661 QKARRNSHGD VIDLHGTPNS SVEERFRRRG EPFSAESGDD SSYRHQQIMA MPAAGSAPSA 720
721 KRYHRRRSSE DSTSRHQRWP ANIEERRARR AYSPAHNRPE TALTSYAYRS SSHHNLYQPN 780
781 GKSSKYPPTY QYGDYYH
|
| Detection Method: | |
| Confidence: | 152.0 |
| Match: | 1oy6A |
| Description: | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains; Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains; Multidrug efflux transporter AcrB transmembrane domain |
Matching Structure (courtesy of the PDB): |
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