| Protein: | Nup133-PA |
| Organism: | Drosophila melanogaster |
| Length: | 1200 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Nup133-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
1226.0 | [0..8] | [1187..3] |
|
Region A: Residues: [1-536] |
1 11 21 31 41 51
| | | | | |
1 MERNLQKQLY GISRESSPGA RRYSMPAASA DSTRKSIFGG SASCAQMSGS LKRTALTNSR 60
61 LSLSVRSTQS IAGIRSDYNS VESFGCPLPV VVNEALTFAG PGAGTVTAKV TQNGWAWVVQ 120
121 GRRLLIWQYK DTAKSGSPPR VGKLARRGGG LAQCRELTLP YSDLGHKSDL ISVFQTEGQQ 180
181 MASCIAVSAT GEVRYWSSIA HDGNSVDLSI LTGQEFVQLL SLPTQQGYLA VTTTCNLVFL 240
241 RVGLTNGRYT LHHKTIKPAT SFLGGFGKKF ASILIGMNTG ADKDQTLVGM CCESNLESGE 300
301 TIVAVLSDRA IQRWSLSNNG NTENLLYEDA DMLRRIREEF ITNFWKFRLP ADSLEIDLHL 360
361 LDFHVVKNKA YILAGAVNAA HAPQMCYALV TGTAQAERML LESFTPLNMN KFFSAKTEED 420
421 CLSVRFVVGS SHIYLYTSKV VYPLHLTNSV PTAELEAEKI EFHQHDDRIL SAVICSQLPL 480
481 FFSRTHGLVS ITPGDFDGTE MMNMSSCNTP DLYAPNSCNA SFAVADHSAL TNSTNN
|
| Detection Method: |  |
| Confidence: | 121.0 |
| Match: | 1xksA |
| Description: | The crystal structure of the N-terminal domain of Nup133 reveals a beta-propeller fold common to several nucleoporins |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleocytoplasmic transporter activity | 7.36869426424539 | bayes_pls_golite062009 |
| transporter activity | 2.55928656852707 | bayes_pls_golite062009 |
| binding | 1.5683135853172 | bayes_pls_golite062009 |
| protein binding | 0.571876690720183 | bayes_pls_golite062009 |
|
Region A: Residues: [537-671] |
1 11 21 31 41 51
| | | | | |
1 LHLFELDPDE MYNELSDEVG QLKAAFLYHM KRNSNMVKTI VDELLRNVTA ADPSGAPMDA 60
61 YKLDRIVITI AEDLAEDIPI ADPRWEEALA DQEMNRHAIG SSRSMQIINQ LRDKIIAFQH 120
121 FITFLHSSLV WDKLN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [672-862] |
1 11 21 31 41 51
| | | | | |
1 VIPCGSHSLK PTGCILADIS EKIVAAMALR SIQTKLPKLI EEAIDATVAL WHEEPQGSLT 60
61 YQDIFYVKLS RFQNVFEALA DIADDRIAAQ NQTTISVAHF VNEINSIVLD VLGQVFKYRK 120
121 QHASSFRLSH EKLPSYENLP WTAMAGSAGV RDTLTRLIDI SVRYGSHCVS ETELKQQLYQ 180
181 QIFELIDLVL D
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [863-938] |
1 11 21 31 41 51
| | | | | |
1 GRKTYLKSVR DTEKFNVLQQ QFEAQRRELI SVLIKDRQYE YAAKIAEKYL DFQSLVLICD 60
61 ETQDKERLED YTRKYE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [939-1101] |
1 11 21 31 41 51
| | | | | |
1 EYDFSQFAIN WHLRQNRHGE VFERFKGNQT ALAQFMRDHP SLGWIQLIFN GDFERAAKVL 60
61 YELAQCETEF VARKKSMLSL AKLAAFAAAE SDLTAQVEKI NADLTLVEYQ SQLGHDVLES 120
121 FGFDPAEQKV LKAEEIISLY IAEENETASE TEFRKALELL SYV
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1102-1200] |
1 11 21 31 41 51
| | | | | |
1 EQPYDMRHKI WCAAIKRDNW TDYDPNNAVH YMQKLLFYKI IEISQLMGND SENVLPPMED 60
61 FLESVELGDL PQQKPFQYLL KLTYEYVADM FKQPDDMEL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
