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View Structure Prediction Details

Protein: CG4836-PB
Organism: Drosophila melanogaster
Length: 1214 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG4836-PB.

Description E-value Query
Range
Subject
Range
CG4836-PC - This gene is referred to in FlyBase by the symbol Dmel\CG4836 (CG4836, FBgn0038762). It is a protein...
751.0 [0..1] [1214..1]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLFGRVTNI LQISRCVSYH APLYRPRSLL HAERLRQLCT SASSGSKSSR RTNHPCRVRV  60
   61 QRYSQKGSNV FSVSDNVDML RKRISFSGNS SNAPKIMPIG LITPETGDG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [110-248]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDLKIVIVPL DLSGMDGNEL KDTLETINKL RLYANHIETF SNSMVEEYGA LNEALQEVES  60
   61 GGQPQEVKAG ASAEDRKFWE AFPSTPTADA VGTALDAGQG ANMPMQRQTA VNSCLQNAVG 120
  121 NSAINSALKT TKSMSAMAQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [249-400]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEPIHGSTKA SNLQELANQE SDFVEEVRVD VPQDLSNRLN DMAVSSMELS FEMDMTNLRQ  60
   61 ALESKDKNAV TPQDPMICMH TKVELDAPGT VEKTLPLRFN ALISGVVEID TQKLSPAQIT 120
  121 EDKMPGFNDD LTSLAANLCS TALEKGFAGK SS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [401-635]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTYIADLELT KDEETIPNRI IDTSHMSAAN QVGQVRESLQ KIAEEACAMP GIQEQEVPVP  60
   61 VDKDGCKHPP VKPKRKCPGK CPLITDPCKE DPCERPAKKK APKKKALKTT EITCKGKGGG 120
  121 KSACGKDKKK DPCGKKDTKK KDPCAKFKSG EKKDPCAKKK DPCAKKKADP CAKKKADPCA 180
  181 KKKKDPCAKK KADPCAKKKK DPCAKKKADP CAKKKKDPCA KKKADPCAKK KSSCA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [636-867]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKDDKKKDPC AKFKKGGSGG KSKCKFSTVA NLPDASRRHL STALSQAFRE SNSVSNGPRF  60
   61 KVYSTLVRRH YRVPVPKIES SCQCSLCTSR LLHKAVAPAR FTINTALMRR RFGGLAGRIS 120
  121 GGALQHISYR GYAKKSKSGG KCGELQTKYP INRGKDIKER TGLREDCFSD EDSCPKKSCT 180
  181 GKCAKVKFPK KKCDRKKKKD GNLLTRSSIA QLQPQRRSFS TRPCCHPSSE KR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [868-1214]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TADDEALTLR ITNPYEISVV PFSKPRPKDF DVLIRTGSVA VSNSDIHVYE NGNRDMEAMS  60
   61 LGHDATGIVE ELGRCVQHLH VGDRVVMESA LSCGICDLCK KGLYNMCSGL VYNGFLSTYQ 120
  121 THPADLCHRL PESISMEAGA LTQTLALGCQ ACFKANVTPT SNVLILGACP TAVAAGICAK 180
  181 AIGAKRVAIA GCMAPALDVV ARDFGFQAVE FDSNALFGEV LEAIYSKFRD WPDCVINCSI 240
  241 SAMTMNLAVM ALQPCGVCVL AECDSECASF NALDVLMKNI RLVPSFRSAN MYPTALQLMQ 300
  301 SGRAHMQKFI TATYPLSKAD EAFRAAQHES NIGLGKVIVN CAEEVDV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 104.0
Match: 1e3jA
Description: Ketose reductase (sorbitol dehydrogenase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
L-iditol 2-dehydrogenase activity 3.00103406168296 bayes_pls_golite062009
alcohol dehydrogenase (NAD) activity 2.94416173750168 bayes_pls_golite062009
alcohol dehydrogenase activity, zinc-dependent 2.26153457113968 bayes_pls_golite062009
catalytic activity 1.79741889688267 bayes_pls_golite062009
oxidoreductase activity 1.69771604880532 bayes_pls_golite062009
chaperone binding 0.484522928331397 bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors 0.418775403210681 bayes_pls_golite062009
NAD or NADH binding 0.39817482511246 bayes_pls_golite062009
L-arabinitol 2-dehydrogenase activity 0.382131941157781 bayes_pls_golite062009
coenzyme binding 0.35922330382799 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 0.32207755075663 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle