| Protein: | srp-PA |
| Organism: | Drosophila melanogaster |
| Length: | 1264 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for srp-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
434.0 | [0..2] | [1246..284] |
|
Region A: Residues: [1-184] |
1 11 21 31 41 51
| | | | | |
1 MTKTTKPKEK AAAGGAVIGS GSGLGSVTKA GGGSLLSNAA DSKIRTAKSN NNKRQAGRAA 60
61 TALAATTTAS ALAATTTAGA TGSNAAANET EIAIETENGE AATPTAAATA AAANLSSLES 120
121 ARSQALTSVV SETARQAVTT ANASATSTST VTAATEIATA TASDTAATSE AAIDDDPSAI 180
181 NTNN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [185-358] |
1 11 21 31 41 51
| | | | | |
1 NNNNSKAQND ASESVKTKVI SYHQSEDQQQ QQQQQAQIYE QQQQFLSQQL ISHHQQEQHQ 60
61 QAQQQQHQQV VQEQHQASWL AYDLTSGSAA AAAAAAAAAS HPHLFGQFSY PPSHHTPTQL 120
121 YEHYPSTDPI MRNNFAFYSV YTGGGGGVGV GMTSHEHLAA AAAAAAAVAQ GTTP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [359-477] |
1 11 21 31 41 51
| | | | | |
1 NIDEVIQDTL KDECFEDGHS TDYHVLTSVS DMHTLKDSSP YALTHEQLHQ QQHHHQQQLH 60
61 HHQQQQQQLY HQQQQQQQQQ QHHHHHNNST SSAGGDSPSS SHALSTLQSF TQLTSATQR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [478-592] |
1 11 21 31 41 51
| | | | | |
1 DSLSPENDAY FAAAQLGSSL QNSSVYAGSL LTQTANGIQY GMQSPNQTQA HLQQQHHQQQ 60
61 QQQHQQHQQQ QLQQQQQQHH HNQHQHHNSS SSSPGPAGLH HSSSSAATAA AVAAA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [593-770] |
1 11 21 31 41 51
| | | | | |
1 TAAVNGHNSS LEDGYGSPRS SHSGGGGGGT LPAFQRIAYP NSGSVERYAP ITNYRGQNDT 60
61 WFDPLSYATS SSGQAQLGVG VGAGVVSNVI RNGRAISAAN AAAAAAADGT TGRVDPGTFL 120
121 SASASLSAMA AESGGDFYKP NSFNVGGGGR SKANTSGAAS SYSCPGSNAT SAATSAVA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [771-880] |
1 11 21 31 41 51
| | | | | |
1 SGTAATAATT LDEHVSRANS RRLSASKRAG LSCSNCHTTH TSLWRRNPAG EPVCNACGLY 60
61 YKLHSVPRPL TMKKDTIQKR KRKPKGTKSE KSKSKSKNAL NAIMESGSLV
|
| Detection Method: | |
| Confidence: | 5.69897 |
| Match: | 4gatA |
| Description: | Erythroid transcription factor GATA-1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.270879137859077 | bayes_pls_golite062009 |
|
Region A: Residues: [881-957] |
1 11 21 31 41 51
| | | | | |
1 TNCHNVGVVL DSSQMDVNDD MKPQLDLKPY NSYSSQPQQQ LPQYQQQQQL LMADQHSSAA 60
61 SSPHSMGSTS LSPSAMS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [958-1126] |
1 11 21 31 41 51
| | | | | |
1 HQHQTHPHQQ QQQQLCSGLD MSPNSNYQMS PLNMQQHQQQ QSCSMQHSPS TPTSIFNTPS 60
61 PTHQLHNNNN NNNNSSIFNN NNNNNSSSNE NNNKLIQKYL QAQQLSSSSN SGSTSDHQLL 120
121 AQLLPNSITA AAAAAAAAAA AAIKTEALSL TSQANCSTAS AGLMVTSTP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1127-1264] |
1 11 21 31 41 51
| | | | | |
1 TTASSTLSSL SHSNIISLQN PYHQAGMTLC KPTRPSPPYY LTPEEDEQPA LIKMEEMDQS 60
61 QQQQQQQQHQ QQQHGEIMLS RSASLDEHYE LAAFQRHQQQ QQQLQQQTAA LLGQHEQHVT 120
121 NYAMHKFGVD RETVVKME
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
