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View Structure Prediction Details

Protein: Alh-PA
Organism: Drosophila melanogaster
Length: 1376 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Alh-PA.

Description E-value Query
Range
Subject
Range
gi|33589292 - gi|33589292|gb|AAQ22413.1| SD04152p [Drosophila melanogaster]
417.0 [0..1] [1376..1]

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Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCERNNNKQV TSSNKIPSSF NAKLELDSSK DDTIHSTSLN KKLVKIKKFK LDDMKEMVGG  60
   61 CCVCSDERGW PENPLVYCDG QNCTVAVHQA CYGIVTVPTG PWYC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.0
Match: 2e6rA
Description: No description for 2e6rA was found.

Predicted Domain #2
Region A:
Residues: [105-296]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKCESQERTS RVRCELCPSR DGALKKTDNS GWAHVVCALY IPEVRFGNVT TMEPIILSLI  60
   61 PQERYSKTCY ICQEIGKPNR ANVGACMQCN KSNCKQQFHV TCAQSLGLLC EEAGNYLDNV 120
  121 KYCGYCQHHY SKLKKGGNVK TIPPYKPIQH DTSSDSCSSP EKEIDSTMNS ATTSATIIKI 180
  181 TSSSGSAGGS SN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.995
Match: 2dfyX
Description: No description for 2dfyX was found.

Predicted Domain #3
Region A:
Residues: [297-406]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLNASSSAGI SAGSSSGSGV SSSAKQRKSN ASSKSSSSSS SSSSSSTGGA PNPSSSSVHS  60
   61 GSASNMTGGG SVLPGSSNIG NISNSLNNNL PGGSSSTSSA GNVPGGSGGI 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [407-532]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISASSGGATQ STSSQSSTAP GTTKSSASSS SSSSNSYKEK HSKSLSKSTS SKDKDGKDSS  60
   61 TNSANNNFTN SSASSTSSNS SSTREKSSSK LSKNKDSNQV PSATSSLSTT SSINTQPSSS 120
  121 TSTATA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [533-787]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSGGTGTHVS SSAASGLNSA PSTTNEHSNH AHTLSTNGTG AGSAAGKLQS VSNLSNSSSG  60
   61 FGSDLRSVST SSSSTVNDST GGFGSNSNSE RENLSGAGSS ASNMPGTIAP GTGGVSSSAA 120
  121 TNLSTNKGGS SSSTANSLTS TSTSSGSSSN SSSKKRKADS AKSTSSISTS GSALEDNNSL 180
  181 ISRYDIKDVQ VALTPLTDFE KEIEKSSKRQ RTELSPPTHQ TSATAEVNAP LASSTSASIA 240
  241 VTASATAASA PPATG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [788-900]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTTLGSSISG NAGSTSSGNS SGVSATGGAQ SAVGSGGYPK TESSKSSGTA SAGSGSGSSS  60
   61 NTSSTKHGSN IKDISSSSNQ QASTASSSSA PSLYVSVPLS TANVPGINLP TSS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [901-1150]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSSSTTSESH SASSRSSGAQ SQHQQQLSNA LVGPPMGGSA GAFHGGTTSA GSSSVIQQQS  60
   61 GKSSPALGTL VSGNSGGSII SASGFPLPSG NLTATTTESG NLKISYEKQT TRVQQLQEQE 120
  121 APPARRSRTL DLSTASASSS SPSAVPATTS PLVVLSNQLP LNSVAASSST GGLKFTYESQ 180
  181 TQMDVPMMPV SAIKDSPPSS PGSEIGSAMH SATTAPGSLT GASTAATAQP GNVRKRGRKA 240
  241 KDATIAAAAA 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [1151-1292]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAAAAAALSN SQQDLKDVRI LQNGASNTPG NPAGSTPTPP ATPASSNAVS SASSIITHTA  60
   61 AHMLGNQINP NSSVAQKLSE QLHMEVQDHS IYTPDSMNSQ YAGVPFPGKQ RNSTAVPSNA 120
  121 TPAQNPLQSM FSGGGMNGNM PI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #9
Region A:
Residues: [1293-1376]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQSLEQLLER QWEQGSQFLM EQAQHFDIAS LLNCLHQLQS ENLRLEEHVT SLIARRDHLL  60
   61 AVNARLQIPL STIASNTKAE AHGK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle