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View Structure Prediction Details

Protein: CG8117-PA
Organism: Drosophila melanogaster
Length: 162 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG8117-PA.

Description E-value Query
Range
Subject
Range
gi|73992771 - gi|73992771|ref|XP_537866.2| PREDICTED: similar to Transcription elongation factor A protein 2 (Tran...
188.0 [0..3] [161..288]

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Predicted Domain #1
Region A:
Residues: [1-162]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMEIRIKCR EMLATALKSG NMPPGCGDPD DMAAKLEDAI YGDLNGCKVK YKNRIRSRLA  60
   61 NLRDPKNPEL RQKFLLGQIT PEELSKMTPE EMASDDMKQM RQKYVQDSIN AAQMAKVQGT 120
  121 KTDQFKCERC DKRNCSQLHI RDGDEPIITF VICDECGNRW KS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.0
Match: 1pqvS
Description: RNA polymerase II-TFIIS complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle