YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16768438
Organism:	Drosophila melanogaster
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16768438.

Description	E-value	Query Range	Subject Range
gi\|86608314 - gi\|86608314\|ref\|YP_477076.1\| thymidylate kinase [Cyanobacteria bacterium Yellowstone B-Prime] KTHY_SYNJB - Thymidylate kinase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=tmk PE=3 SV=1	167.0	[0..2]	[160..34]
gi\|71916914, gi\|... - gi\|72163182\|ref\|YP_290839.1\| thymidylate kinase [Thermobifida fusca YX], gi\|71916914\|gb\|AAZ56816.1\| ...	167.0	[0..2]	[171..499]
gi\|125559330 - gi\|125559330\|gb\|EAZ04866.1\| hypothetical protein OsI_27045 [Oryza sativa Indica Group] gi\|215769070, gi... - gi\|215769070\|dbj\|BAH01299.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|125601251\|gb\|...	166.0	[0..2]	[171..86]
gi\|88912775, gi\|... - gi\|88931496\|ref\|ZP_01137190.1\| Thymidylate kinase [Acidothermus cellulolyticus 11B], gi\|88912775\|gb\|...	164.0	[0..1]	[167..498]
KTHY_ALKEH - Thymidylate kinase OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) GN=tmk P...	162.0	[0..1]	[168..37]
gi\|27262450 - gi\|27262450\|gb\|AAN87506.1\| Thymidylate kinase [Heliobacillus mobilis]	161.0	[0..2]	[162..65]
gi\|84326490 - gi\|84326490\|ref\|ZP_00974517.1\| COG0125: Thymidylate kinase [Pseudomonas aeruginosa 2192]	161.0	[0..1]	[159..36]
gi\|21553651 - gi\|21553651\|gb\|AAM62744.1\| thymidylate kinase-like protein [Arabidopsis thaliana]	161.0	[0..2]	[170..94]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFPERSSSI GQVINSYLTN SKDLPDEVIH LMFSANRWEH INQVKEKLLE GTTLVVDRYS  60
   61 FSGVAYSAAK GLDFDWCYAP ERGLIKPDAV FYLRAPPNDL THRGQYGKER YEKVEFQGRV 120
  121 AEVFNRICSK EGSYFHQFDA RQSVEDLHAQ IASITEELLP KVATRPLDTL S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	1e2dA
Description:	Thymidylate kinase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits