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View Structure Prediction Details

Protein: gi|42716297
Organism: Homo sapiens
Length: 501 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42716297.

Description E-value Query
Range
Subject
Range
gi|114619430 - gi|114619430|ref|XP_519677.2| PREDICTED: clusterin isoform 15 [Pan troglodytes]
894.0 [0..1] [501..1]
gi|61355191 - gi|61355191|gb|AAX41112.1| clusterin [synthetic construct]
805.0 [0..53] [501..1]
gi|60813895, gi|... - gi|60813895|gb|AAX36279.1| clusterin [synthetic construct], gi|123995895|gb|ABM85549.1| clusterin [s...
CLU - clusterin
786.0 [0..53] [501..1]
gi|546505, gi|21... - gi|546505|gb|AAB30623.1| apolipoprotein J; apoJ [Mus sp.], gi|2119394|pir||I56335 apolipoprotein J -...
786.0 [0..54] [501..1]

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Predicted Domain #1
Region A:
Residues: [1-73]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVCSQPQRG CVREQSAINT APPSAHNAAS PGGARGHRVP LTEACKDSRI GGMMKTLLLF  60
   61 VGLLLTWESG QVL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [74-129]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDQTVSDNEL QEMSNQGSKY VNKEIQNAVN GVKQIKTLIE KTNEERKTLL SNLEEA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [130-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKKKEDALNE TRESETKLKE LPGVCNETMM ALWEECKPCL KQTCMKFYAR VCRSGSGLVG  60
   61 RQLEEFLNQS SPFYFWMNGD RIDSLLENDR QQTHMLDVMQ DHFSRASSII DELFQDRFFT 120
  121 REPQDTYHYL PFSLPHRRPH FFFPKSRIVR SLMPFSPYEP LNFHAMFQPF LEMIHEAQQA 180
  181 MDIHFHSPAF QHPPTEF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [327-501]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IREGDDDRTV CREIRHNSTG CLRMKDQCDK CREILSVDCS TNNPSQAKLR RELDESLQVA  60
   61 ERLTRKYNEL LKSYQWKMLN TSSLLEQLNE QFNWVSRLAN LTQGEDQYYL RVTTVASHTS 120
  121 DSDVPSGVTE VVVKLFDSDP ITVTVPVEVS RKNPKFMETV AEKALQEYRK KHREE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle