YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|41202595, gi\|...
Organism:	Homo sapiens
Length:	333 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|41202595, gi|....

Description	E-value	Query Range	Subject Range
gi\|50731037 - gi\|50731037\|ref\|XP_417136.1\| PREDICTED: similar to Mitochondrial intermediate peptidase [Gallus gall...	9.0E-85	[19..329]	[13..323]
gi\|109502538 - gi\|109502538\|ref\|XP_001063239.1\| PREDICTED: similar to adipocyte complement related protein of 30 kD...	1.0E-71	[15..332]	[84..401]
gi\|37181396, gi\|... - gi\|37181396\|gb\|AAQ88512.1\| RIWW6503 [Homo sapiens], ref\|NP_848635.1\| hypothetical protein MGC48915 [...	2.0E-68	[13..332]	[13..332]
gi\|114648995, gi... - gi\|114648997\|ref\|XP_522628.2\| PREDICTED: C1q and tumor necrosis factor related protein 9 isoform 2 [...	3.0E-68	[13..332]	[13..332]
gi\|109120201 - gi\|109120201\|ref\|XP_001090663.1\| PREDICTED: similar to adipocyte complement related protein of 30 kD...	3.0E-67	[13..330]	[13..330]
C1QT9_MOUSE - Complement C1q and tumor necrosis factor-related protein 9 OS=Mus musculus GN=C1qtnf9 PE=1 SV=1	7.0E-64	[21..332]	[21..332]
gi\|73993512 - gi\|73993512\|ref\|XP_851299.1\| PREDICTED: similar to adipocyte complement related protein of 30 kDa [C...	9.0E-64	[13..333]	[13..333]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIWWLLLAI EICTGNINSQ DTCRQGHPGI PGNPGHNGLP GRDGRDGAKG DKGDAGEPGC  60
   61 PGSPGKDGTS GEKGERGADG KVEAKGIKGD QGSRGSPGKH GPKGLAGPMG EKGLRGETGP 120
  121 QGQKGNKGDV GPTGPEGPRG NIGPLGPTGL PGPMGPIGKP GPKGEAGPTG PQGEPGVRGI 180
  181 RGWKGDRGEK GKIGETLVLP KSAFTVGLTV LSKFPSSDVP IKFD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	1y0fB
Description:	No description for 1y0fB was found.

Predicted Domain #2

Region A:
Residues: [225-333]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KILYNEFNHY DTAVGKFTCH IAGVYYFTYH ITVFSRNVQV SLVKNGVKIL HTRDAYVSSE  60
   61 DQASGSIVLQ LKLGDEMWLQ VTGGERFNGL FADEDDDTTF TGFLLFSSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.221849
Match:	1c3hA
Description:	ACRP30 CALCIUM COMPLEX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
receptor binding	3.37824597039547	bayes_pls_golite062009
tumor necrosis factor receptor superfamily binding	3.27382150819697	bayes_pls_golite062009
protein binding	2.25413201891408	bayes_pls_golite062009
binding	2.19044184419375	bayes_pls_golite062009
cytokine activity	2.15273244126886	bayes_pls_golite062009
cell surface binding	1.12145675554147	bayes_pls_golite062009
tumor necrosis factor receptor binding	0.83659914028185	bayes_pls_golite062009
CD40 receptor binding	0.817940383456736	bayes_pls_golite062009
eukaryotic cell surface binding	0.3981620493951	bayes_pls_golite062009
hormone activity	0.0434508002092211	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: