YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|37588848
Organism:	Homo sapiens
Length:	287 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37588848.

Description	E-value	Query Range	Subject Range
gi\|114672225 - gi\|114672225\|ref\|XP_512022.2\| PREDICTED: vesicle-associated membrane protein-associated protein A is... gi\|94721250 - gi\|94721250\|ref\|NP_003565.4\| vesicle-associated membrane protein-associated protein A isoform 1 [Hom...	9.0E-83	[1..287]	[8..294]
gi\|57089795 - gi\|57089795\|ref\|XP_537332.1\| PREDICTED: similar to vesicle-associated membrane protein-associated pr...	3.0E-81	[1..287]	[8..294]
gi\|109121600 - gi\|109121600\|ref\|XP_001118496.1\| PREDICTED: similar to vesicle-associated membrane protein, associat...	1.0E-74	[20..287]	[9..276]
gi\|61365583, gi\|... - gi\|61365587\|gb\|AAX42732.1\| VAMP-associated protein A [synthetic construct], gi\|61365583\|gb\|AAX42731....	7.0E-69	[1..287]	[1..242]
gi\|76633047 - gi\|76633047\|ref\|XP_581024.2\| PREDICTED: similar to Vesicle-associated membrane protein-associated pr...	3.0E-68	[1..287]	[1..282]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKHEQILVL DPPTDLKFKG PFTDVVTTNL KLRNPSDRKV CFKVKTTAPR RYCVRPNSGI  60
   61 IDPGSTVTVS VMLQPFDYDP NEKSKHKFMV QTIFAPPNTS DMEAVWKEAK PDELMDSKLR 120
  121 CVFEMPNEND KLGITPPGNA PTVTSMSSIN NTVATPASYH TKDDPRGLSV LKQEKQKNDM 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.09691
Match:	2criA
Description:	Solution structure of the MSP domain of mouse VAMP-associated proteinA
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [181-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPSKAVPLNA SKQDGPMPKP HSVSLNDTET RKLMEECKRL QGEMMKLSEE NRHLRDEGLR  60
   61 LRKVAHSDKP GSTSTASFRD NVTSPLPSLL VVIAAIFIGF FLGKFIL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits