YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|26638662, gi\|...
Organism:	Homo sapiens
Length:	851 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|26638662, gi|....

Description	E-value	Query Range	Subject Range
gi\|254850775, gi... - gi\|254850775\|ref\|ZP_05240125.1\| DNA mismatch repair protein MutS [Vibrio cholerae MO10], gi\|25484648... gi\|229368830, gi... - gi\|229606175\|ref\|YP_002876823.1\| DNA mismatch repair protein MutS [Vibrio cholerae MJ-1236], gi\|2293... tr\|C6YK41\|C6YK41... - DNA mismatch repair protein MutS OS=Vibrio cholerae MO10 GN=mutS PE=3 SV=1 gi\|75825907 - gi\|75825907\|ref\|ZP_00755342.1\| COG0249: Mismatch repair ATPase (MutS family) [Vibrio cholerae O395]	0.0	[15..850]	[109..875]
gi\|125617373, gi... - gi\|75829241\|ref\|ZP_00758551.1\| COG0249: Mismatch repair ATPase (MutS family) [Vibrio cholerae MO10],... gi\|229353916, gi... - gi\|229508991\|ref\|ZP_04398479.1\| DNA mismatch repair protein MutS [Vibrio cholerae B33], gi\|229353916... MUTS_VIBCH - DNA mismatch repair protein mutS OS=Vibrio cholerae GN=mutS PE=3 SV=1 MUTS_VIBCH - DNA mismatch repair protein MutS OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N1... gi\|75815683 - gi\|75815683\|ref\|ZP_00746180.1\| COG0249: Mismatch repair ATPase (MutS family) [Vibrio cholerae V52] MUTS_VIBCM - DNA mismatch repair protein MutS OS=Vibrio cholerae serotype O1 (strain M66-2) GN=mutS PE=3 SV=1 gi\|229507146, gi... - gi\|229507146\|ref\|ZP_04396652.1\| DNA mismatch repair protein MutS [Vibrio cholerae BX 330286], gi\|229... gi\|229344348, gi... - gi\|229519659\|ref\|ZP_04409102.1\| DNA mismatch repair protein MutS [Vibrio cholerae RC9], gi\|229344348... MUTS_VIBC3 - DNA mismatch repair protein MutS OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa... gi\|153223827, gi... - gi\|153223827\|ref\|ZP_01954082.1\| DNA mismatch repair protein MutS [Vibrio cholerae MAK 757], gi\|12411... gi\|126510344, gi... - gi\|153819112\|ref\|ZP_01971779.1\| DNA mismatch repair protein MutS [Vibrio cholerae NCTC 8457], gi\|126...	0.0	[15..850]	[92..858]
gi\|116219810, gi... - gi\|75819256\|ref\|ZP_00749345.1\| COG0249: Mismatch repair ATPase (MutS family) [Vibrio cholerae V51], ...	0.0	[15..850]	[109..875]
gi\|91227833, gi\|... - gi\|91227833\|ref\|ZP_01262006.1\| DNA mismatch repair protein [Vibrio alginolyticus 12G01], gi\|91188343...	0.0	[13..850]	[82..849]
gi\|75823717, gi\|... - gi\|75823717\|ref\|ZP_00753201.1\| COG0249: Mismatch repair ATPase (MutS family) [Vibrio cholerae RC385]...	0.0	[15..850]	[109..875]
gi\|116183530, gi... - gi\|75854083\|ref\|ZP_00761802.1\| COG0249: Mismatch repair ATPase (MutS family) [Vibrio sp. Ex25], gi\|1...	0.0	[13..850]	[73..840]
MUTS_VIBPA - DNA mismatch repair protein MutS OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=... MUTS_VIBPA - DNA mismatch repair protein mutS OS=Vibrio parahaemolyticus GN=mutS PE=3 SV=1	0.0	[13..850]	[82..849]
MUTS_PHOPR - DNA mismatch repair protein MutS OS=Photobacterium profundum (strain SS9) GN=mutS PE=3 SV=1 MUTS_PHOPR - DNA mismatch repair protein MutS OS=Photobacterium profundum GN=mutS PE=3 SV=1	0.0	[15..850]	[86..852]
MUTS_AZOVD - DNA mismatch repair protein MutS OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=mutS PE=3 ... gi\|67156375 - gi\|67156375\|ref\|ZP_00417968.1\| MutS 1 protein [Azotobacter vinelandii AvOP]	0.0	[13..848]	[82..849]
gi\|90327083, gi\|... - gi\|90412105\|ref\|ZP_01220112.1\| DNA mismatch repair protein [Photobacterium profundum 3TCK], gi\|90327...	0.0	[15..850]	[75..841]

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Predicted Domain #1

Region A:
Residues: [1-851]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLGANPRR TPQGPRPGAA SSGFPSPAPV PGPREAEEEE VEEEEELAEI HLCVLWNSGY  60
   61 LGIAYYDTSD STIHFMPDAP DHESLKLLQR VLDEINPQSV VTSAKQDENM TRFLGKLASQ 120
  121 EHREPKRPEI IFLPSVDFGL EISKQRLLSG NYSFIPDAMT ATEKILFLSS IIPFDCLLTP 180
  181 PGDLRFTPIP LLIPSQVRAL GGLLKFLGRR RIGVELEDYN VSVPILGFKK FMLTHLVNID 240
  241 QDTYSVLQIF KSESHPSVYK VASGLKEGLS LFGILNRCHC KWGEKLLRLW FTRPTHDLGE 300
  301 LSSRLDVIQF FLLPQNLDMA QMLHRLLGHI KNVPLILKRM KLSHTKVSDW QVLYKTVYSA 360
  361 LGLRDACRSL PQSIQLFRDI AQEFSDDLHH IASLIGKVVD FEGSLAENRF TVLPNIDPEI 420
  421 DEKKRRLMGL PSFLTEVARK ELENLDSRIP SCSVIYIPLI GFLLSIPRLP SMVEASDFEI 480
  481 NGLDFMFLSE EKLHYRSART KELDALLGDL HCEIRDQETL LMYQLQCQVL ARAAVLTRVL 540
  541 DLASRLDVLL ALASAARDYG YSRPRYSPQV LGVRIQNGRH PLMELCARTF VPNSTECGGD 600
  601 KGRVKVITGP NSSGKSIYLK QVGLITFMAL VGSFVPAEEA EIGAVDAIFT RIHSCESISL 660
  661 GLSTFMIDLN QVAKAVNNAT AQSLVLIDEF GKGTNTVDGL ALLAAVLRHW LARGPTCPHI 720
  721 FVATNFLSLV QLQLLPQGPL VQYLTMETCE DGNDLVFFYQ VCEGVAKASH ASHTAAQAGL 780
  781 PDKLVARGKE VSDLIRSGKP IKPVKDLLKK NQMENCQTLV DKFMKLDLED PNLDLNVFMS 840
  841 QEVLPAATSI L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	161.0
Match:	1wb9A
Description:	Crystal Structure of E. coli DNA Mismatch Repair enzyme MutS, E38T mutant, in complex with a G.T mismatch
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits