YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|3328175, gi\|1...
Organism:	Homo sapiens
Length:	1118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3328175, gi|1....

Description	E-value	Query Range	Subject Range
gi\|1885356 - gi\|1885356\|gb\|AAC51140.1\| type 1 RNA helicase pNORF1	0.0	[1..1118]	[1..1118]
gi\|73986070 - gi\|73986070\|ref\|XP_533868.2\| PREDICTED: similar to regulator of nonsense transcripts 1 [Canis famili...	0.0	[1..1118]	[1..1119]
gi\|76620868 - gi\|76620868\|ref\|XP_612154.2\| PREDICTED: similar to regulator of nonsense transcripts 1 [Bos taurus]	0.0	[1..1118]	[1..1116]
gi\|109504000, gi... - gi\|149036014\|gb\|EDL90680.1\| rCG38820 [Rattus norvegicus], gi\|109504000\|ref\|XP_001070971.1\| PREDICTED...	0.0	[1..1118]	[1..1113]
gi\|12836885, gi\|... - gi\|13507601\|ref\|NP_109605.1\| regulator of nonsense transcripts 1 [Mus musculus], gi\|12836885\|gb\|AAK0...	0.0	[1..1118]	[1..1113]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVEAYGPSS QTLTFLDTEE AELLGADTQG SEFEFTDFTL PSQTQTPPGG PGGPGGGGAG  60
   61 GPGGAGAGAA AGQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.446	b.33.1	ISP domain
View	Download	0.370	b.26.1	SMAD/FHA domain
View	Download	0.270	c.55.7	Methylated DNA-protein cysteine methyltransferase domain

Predicted Domain #2

Region A:
Residues: [74-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDAQVGPEGI LQNGAVDDSV AKTSQLLAEL NFEEDEEDTY YTKDLPIHAC SYCGIHDPAC  60
   61 VVYCNTSKKW FCNGRGNTSG SHIVNHLVRA KCKEVTLHKD GPLGETVLEC YNCGCRNVFL 120
  121 LGFIPAKADS VVVLLCRQPC ASQSSLKDIN WDSSQWQPLI QDRCFLSWLV KIPSEQEQLR 180
  181 ARQITAQQIN KLEELW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	88.045757
Match:	2iykA
Description:	No description for 2iykA was found.

Predicted Domain #3

Region A:
Residues: [270-936]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KENPSATLED LEKPGVDEEP QHVLLRYEDA YQYQNIFGPL VKLEADYDKK LKESQTQDNI  60
   61 TVRWDLGLNK KRIAYFTLPK TDSDMRLMQG DEICLRYKGD LAPLWKGIGH VIKVPDNYGD 120
  121 EIAIELRSSV GAPVEVTHNF QVDFVWKSTS FDRMQSALKT FAVDETSVSG YIYHKLLGHE 180
  181 VEDVIIKCQL PKRFTAQGLP DLNHSQVYAV KTVLQRPLSL IQGPPGTGKT VTSATIVYHL 240
  241 ARQGNGPVLV CAPSNIAVDQ LTEKIHQTGL KVVRLCAKSR EAIDSPVSFL ALHNQIRNMD 300
  301 SMPELQKLQQ LKDETGELSS ADEKRYRALK RTAERELLMN ADVICCTCVG AGDPRLAKMQ 360
  361 FRSILIDEST QATEPECMVP VVLGAKQLIL VGDHCQLGPV VMCKKAAKAG LSQSLFERLV 420
  421 VLGIRPIRLQ VQYRMHPALS AFPSNIFYEG SLQNGVTAAD RVKKGFDFQW PQPDKPMFFY 480
  481 VTQGQEEIAS SGTSYLNRTE AANVEKITTK LLKAGAKPDQ IGIITPYEGQ RSYLVQYMQF 540
  541 SGSLHTKLYQ EVEIASVDAF QGREKDFIIL SCVRANEHQG IGFLNDPRRL NVALTRARYG 600
  601 VIIVGNPKAL SKQPLWNHLL NYYKEQKVLV EGPLNNLRES LMQFSKPRKL VNTINPGARF 660
  661 MTTAMYD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	176.0
Match:	2gjkA
Description:	No description for 2gjkA was found.

Predicted Domain #4

Region A:
Residues: [937-1118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AREAIIPGSV YDRSSQGRPS SMYFQTHDQI GMISAGPSHV AAMNIPIPFN LVMPPMPPPG  60
   61 YFGQANGPAA GRGTPKGKTG RGGRQKNRFG LPGPSQTNLP NSQASQDVAS QPFSQGALTQ 120
  121 GYISMSQPSQ MSQPGLSQPE LSQDSYLGDE FKSQIDVALS QDSTYQGERA YQHGGVTGLS 180
  181 QY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.221849
Match:	1y0fB
Description:	No description for 1y0fB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits