YRC Public Data Repository - Protein Structure Prediction

Protein:	YQJI_SHIFL
Organism:	Shigella flexneri
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YQJI_SHIFL.

Description	E-value	Query Range	Subject Range
gi\|74313606, gi\|... - gi\|74313606\|ref\|YP_312025.1\| hypothetical protein SSON_3209 [Shigella sonnei Ss046], gi\|73857083\|gb\|...	179.0	[0..1]	[207..1]
gi\|187428413, gi... - gi\|75176046\|ref\|ZP_00696214.1\| COG1695: Predicted transcriptional regulators [Shigella boydii BS512]...	178.0	[0..1]	[207..1]
gi\|82778400, gi\|... - gi\|82778400\|ref\|YP_404749.1\| hypothetical protein SDY_3255 [Shigella dysenteriae Sd197], gi\|81242548...	176.0	[0..1]	[207..1]
gi\|13363426, gi\|... - gi\|15833207\|ref\|NP_311980.1\| hypothetical protein ECs3953 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|254795022, gi... - gi\|254795022\|ref\|YP_003079859.1\| predicted transcriptional regulator [Escherichia coli O157:H7 str. ... gi\|208733774, gi... - gi\|208812497\|ref\|ZP_03253826.1\| transcriptional regulator, PadR family [Escherichia coli O157:H7 str... gi\|208740005, gi... - gi\|208819882\|ref\|ZP_03260202.1\| transcriptional regulator, PadR family [Escherichia coli O157:H7 str... gi\|209400481, gi... - gi\|209400481\|ref\|YP_002272543.1\| transcriptional regulator, PadR family [Escherichia coli O157:H7 st... gi\|217319459, gi... - gi\|217327092\|ref\|ZP_03443175.1\| transcriptional regulator, PadR family [Escherichia coli O157:H7 str... gi\|168785946, gi... - gi\|189373856\|gb\|EDU92272.1\| transcriptional regulator, PadR family [Escherichia coli O157:H7 str. EC... gi\|168797663, gi... - gi\|189379694\|gb\|EDU98110.1\| transcriptional regulator, PadR family [Escherichia coli O157:H7 str. EC... gi\|195937216 - gi\|195937216\|ref\|ZP_03082598.1\| hypothetical protein EscherichcoliO157_12306 [Escherichia coli O157:... gi\|208729088, gi... - gi\|208809287\|ref\|ZP_03251624.1\| transcriptional regulator, PadR family [Escherichia coli O157:H7 str... gi\|168762025, gi... - gi\|189367556\|gb\|EDU85972.1\| transcriptional regulator, PadR family [Escherichia coli O157:H7 str. EC... gi\|168769480, gi... - gi\|189361402\|gb\|EDU79821.1\| transcriptional regulator, PadR family [Escherichia coli O157:H7 str. EC... gi\|168773271, gi... - gi\|187770821\|gb\|EDU34665.1\| transcriptional regulator, PadR family [Escherichia coli O157:H7 str. EC... gi\|189001046, gi... - gi\|189001046\|gb\|EDU70032.1\| transcriptional regulator, PadR family [Escherichia coli O157:H7 str. EC... gi\|168749340, gi... - gi\|188016403\|gb\|EDU54525.1\| transcriptional regulator, PadR family [Escherichia coli O157:H7 str. EC... gi\|189358520, gi... - gi\|189358520\|gb\|EDU76939.1\| transcriptional regulator, PadR family [Escherichia coli O157:H7 str. EC... gi\|25364784, gi\|... - pir\|\|H85967 hypothetical protein yqjI [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15803612, gi\|... - gi\|15803612\|ref\|NP_289645.1\| hypothetical protein Z4424 [Escherichia coli O157:H7 EDL933], gi\|125176... gi\|13363426, gi\|... - gi\|15833207\|ref\|NP_311980.1\| hypothetical protein ECs3953 [Escherichia coli O157:H7], gi\|13363426\|db...	175.0	[0..1]	[207..1]
gi\|218706695, gi... - gi\|218706695\|ref\|YP_002414214.1\| putative transcriptional regulator [Escherichia coli UMN026], gi\|21... gi\|190907502, gi... - gi\|75240898\|ref\|ZP_00724796.1\| COG1695: Predicted transcriptional regulators [Escherichia coli F11],... gi\|110643314, gi... - gi\|110643314\|ref\|YP_671044.1\| hypothetical protein ECP_3161 [Escherichia coli 536], gi\|110344906\|gb\|... gi\|209759198, gi... - gi\|209759204\|gb\|ACI77914.1\| hypothetical protein ECs3953 [Escherichia coli], gi\|209759198\|gb\|ACI7791... gi\|26249655, gi\|... - gi\|26249655\|ref\|NP_755695.1\| hypothetical protein c3824 [Escherichia coli CFT073], gi\|26110083\|gb\|AA... gi\|209920543, gi... - gi\|209920543\|ref\|YP_002294627.1\| hypothetical protein ECSE_3352 [Escherichia coli SE11], gi\|20991380...	175.0	[0..1]	[207..1]
gi\|117625382, gi... - gi\|117625382\|ref\|YP_858705.1\| hypothetical protein APECO1_3345 [Escherichia coli APEC O1], gi\|115514... gi\|91074074, gi\|... - gi\|91212500\|ref\|YP_542486.1\| hypothetical protein UTI89_C3509 [Escherichia coli UTI89], gi\|91074074\|... gi\|226899207, gi... - gi\|237706167\|ref\|ZP_04536648.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|218560157, gi... - gi\|218560157\|ref\|YP_002393070.1\| putative transcriptional regulator [Escherichia coli S88], gi\|21836...	174.0	[0..1]	[207..1]
gi\|192932370, gi... - gi\|75260003\|ref\|ZP_00731281.1\| COG1695: Predicted transcriptional regulators [Escherichia coli E22],... gi\|193067372, gi... - gi\|75239359\|ref\|ZP_00723330.1\| COG1695: Predicted transcriptional regulators [Escherichia coli E1100... gi\|194427659, gi... - gi\|75211024\|ref\|ZP_00711137.1\| COG1695: Predicted transcriptional regulators [Escherichia coli B171]... gi\|218696775, gi... - gi\|218696775\|ref\|YP_002404442.1\| putative transcriptional regulator [Escherichia coli 55989], gi\|218... gi\|195183258 - gi\|195183258\|dbj\|BAG66801.1\| predicted transcriptional regulator [Escherichia coli O111:H-]	173.0	[0..1]	[207..1]
gi\|157078183, gi... - gi\|75187880\|ref\|ZP_00701147.1\| COG1695: Predicted transcriptional regulators [Escherichia coli E2437...	173.0	[0..1]	[207..1]
gi\|213053179 - gi\|213053179\|ref\|ZP_03346057.1\| hypothetical protein Salmoneentericaenterica_09770 [Salmonella enter... gi\|213425632 - gi\|213425632\|ref\|ZP_03358382.1\| hypothetical protein SentesTyphi_08255 [Salmonella enterica subsp. e... gi\|213646103 - gi\|213646103\|ref\|ZP_03376156.1\| hypothetical protein SentesTy_01364 [Salmonella enterica subsp. ente... gi\|213865057 - gi\|213865057\|ref\|ZP_03387176.1\| hypothetical protein SentesT_35005 [Salmonella enterica subsp. enter... gi\|16761988 - gi\|16761988\|ref\|NP_457605.1\| hypothetical protein STY3393 [Salmonella enterica subsp. enterica serov... gi\|16504291, gi\|... - gi\|25364788\|pir\|\|AE0893 conserved hypothetical protein STY3393 [imported] - Salmonella enterica subs... gi\|29139109, gi\|... - gi\|29143475\|ref\|NP_806817.1\| hypothetical protein t3135 [Salmonella enterica subsp. enterica serovar... gi\|214001812 - gi\|214001812\|ref\|ZP_03412547.1\| hypothetical protein Salmonellentericaenterica_15801 [Salmonella ent...	152.0	[0..1]	[207..1]
gi\|207858472, gi... - gi\|207858472\|ref\|YP_002245123.1\| hypothetical protein SEN3057 [Salmonella enterica subsp. enterica s... gi\|205354129, gi... - gi\|205354129\|ref\|YP_002227930.1\| hypothetical protein SG3111 [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=yqjI] [protein=putative transcriptional regulator] [protein_id=YP_005239390.1] [location=33984... gi\|16766514, gi\|... - gi\|16766514\|ref\|NP_462129.1\| putative transcriptional regulator [Salmonella typhimurium LT2], gi\|164...	151.0	[0..1]	[207..2]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHHHEGCCK HEGQPRHEGC CKGEKSEHEH CGHGHQHEHG QCCGGRHGRG GGRRQRFFGH  60
   61 GELRLVILDI LSRDDSHGYE LIKAIENLTQ GNYTPSPGVI YPTLDFLQEQ SLITIREEEG 120
  121 GKKQIALTEQ GAQWLEENRE QVEMIEERIK ARCVGAALRQ NPQMKRALDN FKAVLDLRVN 180
  181 QSDISDAQIK KIIAVIDRAA FDITQLD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.522879
Match:	1yg2A
Description:	Structure of the Vibrio cholerae virulence activator AphA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.835523092977445	bayes_pls_golite062009
transcription regulator activity	0.4843036104266	bayes_pls_golite062009
nucleic acid binding	0.37117756729668	bayes_pls_golite062009
DNA binding	0.3118855114645	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: