YRC Public Data Repository - Protein Structure Prediction

Protein:	ULAR_ECOLI, YJFQ...
Organism:	Escherichia coli
Length:	251 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ULAR_ECOLI, YJFQ....

Description	E-value	Query Range	Subject Range
gi\|20808937 - gi\|20808937\|ref\|NP_624108.1\| Transcriptional regulator of sugar metabolism [Thermoanaerobacter tengc... gi\|20808937, gi\|... - gi\|20808937\|ref\|NP_624108.1\| sugar metabolism transcriptional regulator [Thermoanaerobacter tengcong...	223.0	[0..1]	[249..1]
gi\|76795902, gi\|... - gi\|76795902\|ref\|ZP_00778272.1\| regulatory protein, DeoR [Thermoanaerobacter ethanolicus ATCC 33223],...	222.0	[0..1]	[249..7]
gi\|82500790, gi\|... - gi\|82500790\|ref\|ZP_00886187.1\| regulatory protein, DeoR [Caldicellulosiruptor saccharolyticus DSM 89...	213.0	[0..1]	[250..1]
gi\|91191480, gi\|... - gi\|91223394\|ref\|ZP_01258659.1\| transcriptional regulator, DeoR family protein [Vibrio alginolyticus ...	213.0	[0..1]	[251..1]
gi\|254229357, gi... - gi\|75855918\|ref\|ZP_00763557.1\| COG1349: Transcriptional regulators of sugar metabolism [Vibrio sp. E...	213.0	[0..1]	[251..1]
gi\|89074567, gi\|... - gi\|89074567\|ref\|ZP_01161039.1\| transcriptional regulator, DeoR family protein [Photobacterium sp. SK...	212.0	[0..1]	[251..1]
gi\|37199558, gi\|... - gi\|37680809\|ref\|NP_935418.1\| transcriptional regulator of sugar metabolism [Vibrio vulnificus YJ016]...	212.0	[0..2]	[250..11]
gi\|70734006, gi\|... - gi\|70734006\|ref\|YP_257646.1\| DeoR family transcriptional regulator [Pseudomonas fluorescens Pf-5], g...	211.0	[0..1]	[251..1]
gi\|28899161, gi\|... - gi\|28899161\|ref\|NP_798766.1\| DeoR family transcriptional regulator [Vibrio parahaemolyticus RIMD 221... gi\|28807385 - gi\|28807385\|dbj\|BAC60650.1\| transcriptional regulator, DeoR family [Vibrio parahaemolyticus RIMD 221... gi\|149749939, gi... - gi\|153836793\|ref\|ZP_01989460.1\| transcriptional regulator, DeoR family [Vibrio parahaemolyticus AQ38...	211.0	[0..1]	[251..1]
gi\|32472050, gi\|... - gi\|32472050\|ref\|NP_865044.1\| putative aga operon transcriptional repressor [Rhodopirellula baltica S...	211.0	[0..1]	[250..1]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEAQRHQIL LEMLAQLGFV TVEKVVERLG ISPATARRDI NKLDESGKLK KVRNGAEAIT  60
   61 QQR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.154902
Match:	2p5vA
Description:	No description for 2p5vA was found.

Predicted Domain #2

Region A:
Residues: [64-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRWTPMNLHQ AQNHDEKVRI AKAASQLVNP GESVVINCGS TAFLLGREMC GKPVQIITNY  60
   61 LPLANYLIDQ EHDSVIIMGG QYNKSQSITL SPQGSENSLY AGHWMFTSGK GLTAEGLYKT 120
  121 DMLTAMAEQK MLSVVGKLVV LVDSSKIGER AGMLFSRADQ IDMLITGKNA NPEILQQLEA 180
  181 QGVSILRV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.522879
Match:	1ks2A
Description:	D-ribose-5-phosphate isomerase (RpiA), catalytic domain; D-ribose-5-phosphate isomerase (RpiA), lid domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.68776709414398	bayes_pls_golite062009
nucleic acid binding	0.965520574888216	bayes_pls_golite062009
transcription regulator activity	0.769423781192988	bayes_pls_golite062009
DNA binding	0.223734115868557	bayes_pls_golite062009
binding	0.199466104892993	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: