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View Structure Prediction Details

Protein: YJDK_ECOLI
Organism: Escherichia coli
Length: 98 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJDK_ECOLI.

Description E-value Query
Range
Subject
Range
gi|218367985, gi... - gi|218561216|ref|YP_002394129.1| hypothetical protein ECS88_4632 [Escherichia coli S88], gi|21836798...
gi|218429987, gi... - gi|218692423|ref|YP_002400635.1| hypothetical protein ECED1_4863 [Escherichia coli ED1a], gi|2184299...
gi|115515537, gi... - gi|117626413|ref|YP_859736.1| hypothetical protein APECO1_2325 [Escherichia coli APEC O1], gi|115515...
gi|226901629, gi... - gi|237703717|ref|ZP_04534198.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi|22690...
gi|110644486, gi... - gi|110644486|ref|YP_672216.1| hypothetical protein ECP_4371 [Escherichia coli 536], gi|110346078|gb|...
gi|91075250, gi|... - gi|91213676|ref|YP_543662.1| hypothetical protein UTI89_C4723 [Escherichia coli UTI89], gi|91075250|...
171.0 [0..1] [98..1]

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Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKNKFNTY VVSFDYPSSY SSVFLRLRSL MYDMNFSSIV ADEYGIPRQL NENSFAITTS  60
   61 LAASEIEDLI RLKCLDLPDI DFDLNIMTVD DYFRQFYK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.693 a.77.1 DEATH domain
View Download 0.664 a.121.1 Tetracyclin repressor-like, C-terminal domain
View Download 0.627 a.60.8 HRDC-like
View Download 0.603 a.35.1 lambda repressor-like DNA-binding domains
View Download 0.603 a.35.1 lambda repressor-like DNA-binding domains
View Download 0.593 a.35.1 lambda repressor-like DNA-binding domains
View Download 0.514 a.130.1 Chorismate mutase II
View Download 0.500 a.39.1 EF-hand
View Download 0.446 d.2.1 Lysozyme-like
View Download 0.443 a.39.1 EF-hand


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle