YRC Public Data Repository - Protein Structure Prediction

Protein:	YJDK_ECOLI
Organism:	Escherichia coli
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJDK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|218367985, gi... - gi\|218561216\|ref\|YP_002394129.1\| hypothetical protein ECS88_4632 [Escherichia coli S88], gi\|21836798... gi\|218429987, gi... - gi\|218692423\|ref\|YP_002400635.1\| hypothetical protein ECED1_4863 [Escherichia coli ED1a], gi\|2184299... gi\|115515537, gi... - gi\|117626413\|ref\|YP_859736.1\| hypothetical protein APECO1_2325 [Escherichia coli APEC O1], gi\|115515... gi\|226901629, gi... - gi\|237703717\|ref\|ZP_04534198.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|110644486, gi... - gi\|110644486\|ref\|YP_672216.1\| hypothetical protein ECP_4371 [Escherichia coli 536], gi\|110346078\|gb\|... gi\|91075250, gi\|... - gi\|91213676\|ref\|YP_543662.1\| hypothetical protein UTI89_C4723 [Escherichia coli UTI89], gi\|91075250\|...	171.0	[0..1]	[98..1]

Back

Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKNKFNTY VVSFDYPSSY SSVFLRLRSL MYDMNFSSIV ADEYGIPRQL NENSFAITTS  60
   61 LAASEIEDLI RLKCLDLPDI DFDLNIMTVD DYFRQFYK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits