YRC Public Data Repository - Protein Structure Prediction

Protein:	YICC_ECOLI
Organism:	Escherichia coli
Length:	287 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YICC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|91190259, gi\|... - gi\|91225013\|ref\|ZP_01260272.1\| putative alpha helix protein [Vibrio alginolyticus 12G01], gi\|9119025...	335.0	[0..1]	[287..1]
gi\|75855755, gi\|... - gi\|75855755\|ref\|ZP_00763397.1\| COG1561: Uncharacterized stress-induced protein [Vibrio sp. Ex25], gi...	333.0	[0..1]	[287..1]
gi\|196158845, gi... - gi\|88795406\|ref\|ZP_01111103.1\| hypothetical protein MADE_10037 [Alteromonas macleodii 'Deep ecotype'...	333.0	[0..1]	[287..1]
gi\|84386441, gi\|... - gi\|84386441\|ref\|ZP_00989469.1\| hypothetical protein V12B01_02990 [Vibrio splendidus 12B01], gi\|84378...	331.0	[0..1]	[287..1]
gi\|85835586, gi\|... - gi\|86146529\|ref\|ZP_01064851.1\| hypothetical protein MED222_18033 [Vibrio sp. MED222], gi\|85835586\|gb...	331.0	[0..1]	[287..1]
gi\|153825960, gi... - gi\|153825960\|ref\|ZP_01978627.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149740368... gi\|15640239, gi\|... - gi\|9654616\|gb\|AAF93385.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|11280461 - pir\|\|C82350 conserved hypothetical protein VC0209 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|227080430, gi... - gi\|227080430\|ref\|YP_002808981.1\| hypothetical protein VCM66_0197 [Vibrio cholerae M66-2], gi\|2270083... gi\|153216089, gi... - gi\|153216089\|ref\|ZP_01950263.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124114465\|... gi\|121548206, gi... - gi\|121587568\|ref\|ZP_01677334.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215482... gi\|254851338, gi... - gi\|254851338\|ref\|ZP_05240688.1\| conserved hypothetical protein [Vibrio cholerae MO10], gi\|254847043\|... gi\|124118738, gi... - gi\|153222598\|ref\|ZP_01953302.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241187... gi\|153821607, gi... - gi\|153821607\|ref\|ZP_01974274.1\| conserved hypothetical protein [Vibrio cholerae B33], gi\|126520894\|g... gi\|153819946, gi... - gi\|153819946\|ref\|ZP_01972613.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12650... gi\|150422457, gi... - gi\|254291600\|ref\|ZP_04962389.1\| conserved hypothetical protein [Vibrio cholerae AM-19226], gi\|197751...	330.0	[0..1]	[287..1]
gi\|46911838, gi\|... - gi\|54307418\|ref\|YP_128438.1\| hypothetical protein PBPRA0197 [Photobacterium profundum SS9], gi\|46911...	330.0	[0..1]	[287..1]
gi\|116220656, gi... - gi\|75819960\|ref\|ZP_00750020.1\| COG1561: Uncharacterized stress-induced protein [Vibrio cholerae V51]...	330.0	[0..1]	[287..8]
gi\|75828200 - gi\|75828200\|ref\|ZP_00757635.1\| COG1561: Uncharacterized stress-induced protein [Vibrio cholerae O395... gi\|75816553 - gi\|75816553\|ref\|ZP_00747020.1\| COG1561: Uncharacterized stress-induced protein [Vibrio cholerae V52]	330.0	[0..1]	[287..8]
gi\|229506990, gi... - gi\|229506990\|ref\|ZP_04396498.1\| protein YicC [Vibrio cholerae BX 330286], gi\|229356095\|gb\|EEO21014.1... gi\|75830216, gi\|... - gi\|75830216\|ref\|ZP_00759498.1\| COG1561: Uncharacterized stress-induced protein [Vibrio cholerae MO10... gi\|229369153, gi... - gi\|229606498\|ref\|YP_002877146.1\| protein YicC [Vibrio cholerae MJ-1236], gi\|229369153\|gb\|ACQ59576.1\|... gi\|229346733, gi... - gi\|229516307\|ref\|ZP_04405755.1\| protein YicC [Vibrio cholerae RC9], gi\|229346733\|gb\|EEO11703.1\| prot... gi\|229509360, gi... - gi\|229509360\|ref\|ZP_04398843.1\| protein YicC [Vibrio cholerae B33], gi\|229353675\|gb\|EEO18612.1\| prot...	330.0	[0..1]	[287..8]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRSMTAYAR REIKGEWGSA TWEMRSVNQR YLETYFRLPE QFRSLEPVVR ERIRSRLTRG  60
   61 KVECTLRYEP DVSAQGELIL NEKLAKQLVT AANWVKMQSD EGEINPVDIL RWPGVMAAQE 120
  121 QDLDAIAAEI LAALDGTLDD FIVARETEGQ ALKALIEQRL EGVTAEVVKV RSHMPEILQW 180
  181 QRERLVAKLE DAQVQL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	88.200659
Match:	PF03755.4
Description:	No description for PF03755.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [197-287]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENNRLEQELV LLAQRIDVAE ELDRLEAHVK ETYNILKKKE AVGRRLDFMM QEFNRESNTL  60
   61 ASKSINAEVT NSAIELKVLI EQMREQIQNI E

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	55.148742
Match:	PF08340.2
Description:	No description for PF08340.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.950	0.398	cytoplasm	a.24.3	Cytochromes
View	Download	0.919	0.055	cytoplasm	a.7.6	Ribosomal protein S20
View	Download	0.938	0.000	cytoplasm	a.24.4	Hemerythrin
View	Download	0.958	0.000	cytoplasm	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.962	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits