YRC Public Data Repository - Protein Structure Prediction

Protein:	YHIF_ECOLI, DCTR...
Organism:	Escherichia coli
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHIF_ECOLI, DCTR....

Description	E-value	Query Range	Subject Range
gi\|219994325, gi... - gi\|89209594\|ref\|ZP_01187989.1\| regulatory protein, LuxR:Response regulator receiver [Halothermothrix...	129.0	[0..2]	[176..6]
gi\|89202930, gi\|... - gi\|89202930\|ref\|ZP_01181634.1\| regulatory protein, LuxR:Response regulator receiver [Bacillus cereus...	125.0	[0..2]	[176..4]
gi\|7471836 - pir\|\|E75450 DNA-binding response regulator - Deinococcus radiodurans (strain R1) gi\|6458715, gi\|1... - gi\|6458715\|gb\|AAF10563.1\|AE001951_3 DNA-binding response regulator [Deinococcus radiodurans R1], gi\|...	124.0	[0..2]	[176..28]
gi\|94984662, gi\|... - gi\|94984662\|ref\|YP_604026.1\| two component LuxR family transcriptional regulator [Deinococcus geothe...	124.0	[0..2]	[176..17]
gi\|56418969, gi\|... - gi\|56418969\|ref\|YP_146287.1\| two-component response regulator [Geobacillus kaustophilus HTA426], gi\|...	124.0	[0..2]	[176..4]
gi\|106885795, gi... - gi\|160882054\|ref\|YP_001561022.1\| two component LuxR family transcriptional regulator [Clostridium ph...	124.0	[0..2]	[176..6]
gi\|52143908, gi\|... - gi\|52143908\|ref\|YP_082920.1\| response regulator [Bacillus cereus E33L], gi\|51977377\|gb\|AAU18927.1\| r...	123.0	[0..2]	[175..4]
gi\|196252895, gi... - gi\|196252895\|ref\|ZP_03151542.1\| two component transcriptional regulator, LuxR family [Clostridium th... gi\|67873312, gi\|... - gi\|67873312\|ref\|ZP_00503591.1\| regulatory protein, LuxR:Response regulator receiver [Clostridium the...	123.0	[0..2]	[175..6]
gi\|47557254, gi\|... - gi\|47565618\|ref\|ZP_00236658.1\| MW1789 [Bacillus cereus G9241], gi\|47557254\|gb\|EAL15582.1\| MW1789 [Ba...	123.0	[0..2]	[174..5]
gi\|206737385, gi... - gi\|206968465\|ref\|ZP_03229421.1\| DNA-binding response regulator [Bacillus cereus AH1134], gi\|20673738... gi\|218160924, gi... - gi\|218232967\|ref\|YP_002366221.1\| DNA-binding response regulator [Bacillus cereus B4264], gi\|21816092... gi\|30019588, gi\|... - gi\|30019588\|ref\|NP_831219.1\| two-component response regulator yvqC [Bacillus cereus ATCC 14579], gi\|...	123.0	[0..2]	[175..4]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLIITRDTM FFTAMKNILS KGNVVHIQNE EEIDVMLHQN AFVIIDTLMN NVFHSNFLTQ  60
   61 IERLKPVHVI IFSPFNIKRC LGKVPVTFVP RTITIIDFVA LINGSYCSVP EAAVSLSRKQ 120
  121 HQVLSCIANQ MTTEDILEKL KISLKTFYCH KHNIMMILNL KRINELVRHQ HIDYLV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.30103
Match:	1yioA
Description:	Crystallographic structure of response regulator StyR from Pseudomonas fluorescens
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	4.43807682690914	bayes_pls_golite062009
signal transducer activity	3.66828284948575	bayes_pls_golite062009
molecular transducer activity	3.66828284948575	bayes_pls_golite062009
two-component response regulator activity	3.21130891290069	bayes_pls_golite062009
DNA binding	2.11437569924724	bayes_pls_golite062009
nucleic acid binding	1.99914662234685	bayes_pls_golite062009
transcription factor activity	1.5797706988574	bayes_pls_golite062009
binding	1.22427537074115	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: