YRC Public Data Repository - Protein Structure Prediction

Protein:	YGEI_ECOLI
Organism:	Escherichia coli
Length:	72 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGEI_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|189369213, gi... - gi\|189369213\|gb\|EDU87629.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168753774, gi... - gi\|189358447\|gb\|EDU76866.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168747686, gi... - gi\|188017857\|gb\|EDU55979.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|15832964, gi\|... - gi\|15832964\|ref\|NP_311737.1\| hypothetical protein ECs3710 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|217327407, gi... - gi\|217327407\|ref\|ZP_03443490.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|209160070, gi... - gi\|209398670\|ref\|YP_002272318.1\| hypothetical protein ECH74115_4124 [Escherichia coli O157:H7 str. E... gi\|189374007, gi... - gi\|189374007\|gb\|EDU92423.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189003304, gi... - gi\|189003304\|gb\|EDU72290.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|15832964, gi\|... - gi\|15832964\|ref\|NP_311737.1\| hypothetical protein ECs3710 [Escherichia coli O157:H7], gi\|13363182\|db... gi\|168775713, gi... - gi\|187768735\|gb\|EDU32579.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|25496459, gi\|... - pir\|\|B85938 hypothetical protein Z4174 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|189363609, gi... - gi\|189363609\|gb\|EDU82028.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|254594193, gi... - gi\|254794793\|ref\|YP_003079630.1\| hypothetical protein ECSP_3807 [Escherichia coli O157:H7 str. TW143... gi\|208733189, gi... - gi\|208811912\|ref\|ZP_03253241.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|15803374, gi\|... - gi\|15803374\|ref\|NP_289407.1\| hypothetical protein Z4174 [Escherichia coli O157:H7 EDL933], gi\|125173... gi\|208725903, gi... - gi\|208806102\|ref\|ZP_03248439.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195936458 - gi\|195936458\|ref\|ZP_03081840.1\| hypothetical protein EscherichcoliO157_08332 [Escherichia coli O157:... gi\|168799969, gi... - gi\|189377660\|gb\|EDU96076.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi...	120.0	[0..1]	[72..1]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNPIGINNL SQSSNIANAT GDEVVSLDKH INTSATDTDQ IQAFIVSTWM APFQNDMYSE  60
   61 DNPISPYYKI EW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits