YRC Public Data Repository - Protein Structure Prediction

Protein:	YDDK_ECOLI
Organism:	Escherichia coli
Length:	318 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDDK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|75907715, gi\|... - gi\|75907715\|ref\|YP_322011.1\| small GTP-binding protein domain-containing protein [Anabaena variabili...	252.0	[0..4]	[317..119]
FBpp0300846 - type=protein; loc=3R:join(22363345..22363506,22370765..22370882,22380079..22380661,22380955..2238137...	249.0	[0..4]	[317..53]
gi\|113477255, gi... - gi\|71673924\|ref\|ZP_00671672.1\| Small GTP-binding protein domain [Trichodesmium erythraeum IMS101], g...	249.0	[0..4]	[317..65]
gi\|186464136, gi... - gi\|23128321\|ref\|ZP_00110172.1\| COG4886: Leucine-rich repeat (LRR) protein [Nostoc punctiforme PCC 73...	249.0	[0..4]	[317..165]

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Predicted Domain #1

Region A:
Residues: [1-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITDLILHNH PRMKTITLND NHIAHLNAKN TTKLEYLNLS NNNLLPTNDI DQLISSKHLW  60
   61 HVLVNGINND PLAQMQYWTA VRNIIDDTNE VTIDLSGLNL TTQPPGLQNF TSINLDNNQF 120
  121 THFDATNYDR LVKLSLNSNA LESINFPQGR NVSITHISMN NNALRNIDID RLSSVTYFSA 180
  181 AHNQLEFVQL ESCEWLQYLN LSHNQLTDIV AGNKNELLLL DLSHNKLTSL HNDLFPNLNT 240
  241 LLINNNLLSE IKIFYSNFCN VQTLNAANNQ LKYINLDFLT YLPSIKSLRL DNNKITHIDT 300
  301 NNTSDIGTLF PIIKQSKT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.0
Match:	2id5A
Description:	No description for 2id5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits