YRC Public Data Repository - Protein Structure Prediction

Protein:	YDCM_ECOLI
Organism:	Escherichia coli
Length:	402 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDCM_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|25325075 - pir\|\|G86117 probable virulence protein Z5816 [imported] - Escherichia coli (strain O157:H7, substrai... gi\|12519201, gi\|... - gi\|15804796\|ref\|NP_290837.1\| putative virulence protein [Escherichia coli O157:H7 EDL933], gi\|125192... gi\|38704244 - gi\|38704244\|ref\|NP_313210.2\| putative transposase [Escherichia coli O157:H7] gi\|38704244 - gi\|38704244\|ref\|NP_313210.2\| putative transposase [Escherichia coli O157:H7 str. Sakai] gi\|189369002, gi... - gi\|189403856\|ref\|ZP_02785457.2\| IS605 family transposase orfB [Escherichia coli O157:H7 str. EC4501]... gi\|217325334, gi... - gi\|217325334\|ref\|ZP_03441418.1\| transposase, IS605 orfB family [Escherichia coli O157:H7 str. TW1458...	322.0	[0..1]	[402..1]
gi\|81241947, gi\|... - gi\|82777799\|ref\|YP_404148.1\| putative virulence protein [Shigella dysenteriae Sd197], gi\|81241947\|gb...	321.0	[0..1]	[402..1]
gi\|74312216, gi\|... - gi\|74312216\|ref\|YP_310635.1\| putative virulence protein [Shigella sonnei Ss046], gi\|73855693\|gb\|AAZ8...	317.0	[0..1]	[402..1]
gi\|13364660 - gi\|13364660\|dbj\|BAB38606.1\| putative transposase TnpB of insertion sequence IS609 [Escherichia coli ... gi\|13364660 - gi\|13364660\|dbj\|BAB38606.1\| putative transposase TnpB of insertion sequence IS609 [Escherichia coli ... gi\|25325057 - pir\|\|G91276 hypothetical protein ECs5183 [imported] - Escherichia coli (strain O157:H7, substrain R...	305.0	[0..21]	[402..1]
gi\|75175208 - gi\|75175208\|ref\|ZP_00695524.1\| COG0675: Transposase and inactivated derivatives [Shigella boydii BS5...	304.0	[0..21]	[402..1]
gi\|75231809 - gi\|75231809\|ref\|ZP_00718150.1\| COG0675: Transposase and inactivated derivatives [Escherichia coli B7...	303.0	[0..21]	[402..1]
gi\|75190481 - gi\|75190481\|ref\|ZP_00703748.1\| COG0675: Transposase and inactivated derivatives [Escherichia coli E2...	303.0	[0..21]	[402..1]
gi\|75259549 - gi\|75259549\|ref\|ZP_00730868.1\| COG0675: Transposase and inactivated derivatives [Escherichia coli E2...	303.0	[0..21]	[402..1]

Back

Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLQAFKFQ LRPGGQQECE MRRFAGACRF VFNRALARQN ENHEAGNKYI PYGKMASWLV  60
   61 EWKNATETQW LKDSPSQPLQ QSLKDLERAY KNFFRKRAAF PRFKKRGQN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [110-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAFRYPQGVK LDQENSRIFL PKLGWMRYRN SRQVTGVVKN VTVSQSCGKW YISIQTESEV  60
   61 STPVHPSASM VGLDAGVAKL ATLSDGTVFE PVNSFQKNQK KLARLQRQLS RKVKFSNNWQ 120
  121 KQKRKIQRLH SCIANIRRDY LHKVTTAVSK NHAMIVIEDL KVSNMSKSAA GTVSQPG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [287-402]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNVRAKSGLN RSILDQGWYE MRRQLAYKQL WRGGQVLAVP PAYTSQRCAY CGHTAKENRL  60
   61 SQSKFRCQVC GYTANADVNG ARNILAAGHA VLACGEMVQS GRPLKQEPTE MIQATA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.69897
Match:	PF07282.2
Description:	No description for PF07282.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits