YRC Public Data Repository - Protein Structure Prediction

Protein:	YDAW_ECOLI
Organism:	Escherichia coli
Length:	203 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDAW_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|170081041, gi... - gi\|170081041\|ref\|YP_001730361.1\| Rac prophage; DNA-binding protein [Escherichia coli str. K-12 subst... gi\|89108210, gi\|... - gi\|89108210\|ref\|AP_001990.1\| predicted DNA-binding protein [Escherichia coli str. K-12 substr. W3110... gi\|90111258, gi\|... - gi\|90111258\|ref\|NP_415879.2\| Rac prophage; predicted DNA-binding protein [Escherichia coli K12], gi\|...	248.0	[0..18]	[203..1]
gi\|117623607, gi... - gi\|117623607\|ref\|YP_852520.1\| putative transcription regulatory protein [Escherichia coli APEC O1], ...	213.0	[0..1]	[177..1]
gi\|13361411, gi\|... - gi\|15831200\|ref\|NP_309973.1\| hypothetical protein ECs1946 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|25390569 - pir\|\|B90872 hypothetical protein ECs1946 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|13361411, gi\|... - gi\|15831200\|ref\|NP_309973.1\| hypothetical protein ECs1946 [Escherichia coli O157:H7], gi\|13361411\|db...	211.0	[0..1]	[177..1]
gi\|16760805 - gi\|16760805\|ref\|NP_456422.1\| hypothetical protein STY2061 [Salmonella enterica subsp. enterica serov... gi\|16503102, gi\|... - gi\|25511838\|pir\|\|AB0738 conserved hypothetical protein STY2061 [imported] - Salmonella enterica subs...	209.0	[0..1]	[177..1]
gi\|12515388, gi\|... - gi\|15801804\|ref\|NP_287822.1\| hypothetical protein Z2395 [Escherichia coli O157:H7 EDL933], gi\|125153... gi\|25501034 - pir\|\|H85746 unknown protein encoded within prophage CP-933R [imported] - Escherichia coli (strain O1...	208.0	[0..1]	[177..1]
gi\|83587496, gi\|... - gi\|83587496\|ref\|ZP_00926124.1\| COG0640: Predicted transcriptional regulators [Escherichia coli 101-1...	191.0	[0..18]	[177..1]
gi\|192931618, gi... - gi\|75259466\|ref\|ZP_00730785.1\| COG0640: Predicted transcriptional regulators [Escherichia coli E22],...	190.0	[0..18]	[177..1]
gi\|75190191, gi\|... - gi\|75190191\|ref\|ZP_00703458.1\| COG0640: Predicted transcriptional regulators [Escherichia coli E2437...	190.0	[0..18]	[177..1]
gi\|188491370, gi... - gi\|75511795\|ref\|ZP_00734413.1\| COG0640: Predicted transcriptional regulators [Escherichia coli 53638...	187.0	[0..18]	[177..1]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSQELRSN FYREKNLMET VFDALKAMGK ATSIELAARL DISREEVLNE LWELKKAGFV  60
   61 DKSAYTWRVA DNNVQQEQP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [80-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQAELPEEIT TATVAKISEC DLTATIEQRG PQTADELATL FGTTSRKVAS TLAMAISKGR  60
   61 LIRVNQGGKF RYCIPGDNLP AEPKAASVSP LWLSASSSAC HGVLIITVIT PSPTKNSATK 120
  121 MPEN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.01
Match:	2cg4A
Description:	No description for 2cg4A was found.

Predicted functions:

Term	Confidence	Notes
binding	0.683379929086364	bayes_pls_golite062009
transcription regulator activity	0.16959343932447	bayes_pls_golite062009
nucleic acid binding	0.0949481158963694	bayes_pls_golite062009
DNA binding	0.00746597740509714	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: