| Protein: | YCBS_ECOLI |
| Organism: | Escherichia coli |
| Length: | 866 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCBS_ECOLI.
| Description | E-value | Query Range |
Subject Range |
|
|
870.0 | [0..1] | [866..1] |
|
|
868.0 | [0..1] | [866..1] |
|
|
865.0 | [0..1] | [866..1] |
|
|
856.0 | [0..17] | [866..2] |
|
|
854.0 | [0..17] | [866..2] |
|
|
854.0 | [0..17] | [866..2] |
|
|
852.0 | [0..17] | [866..2] |
|
|
852.0 | [0..17] | [866..2] |
|
|
852.0 | [0..17] | [866..2] |
|
|
847.0 | [0..17] | [866..2] |
|
Region A: Residues: [1-149] |
1 11 21 31 41 51
| | | | | |
1 MYRTHRQHSL LSSGGVPSFI GGLVVFVSAA FNAQAETWFD PAFFKDDPSM VADLSRFEKG 60
61 QKITPGVYRV DIVLNQTIVD TRNVNFVEIT PEKGIAACLT TESLDAMGVN TDAFPAFKQL 120
121 DKQACVPLAE IIPDASVTFN VNKLRLEIS
|
| Detection Method: |  |
| Confidence: | 32.0 |
| Match: | 1ze3D |
| Description: | Crystal Structure of the Ternary Complex of FIMD (N-Terminal Domain) with FIMC and the Pilin Domain of FIMH |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| fimbrial usher porin activity | 3.07403393180075 | bayes_pls_golite062009 |
| porin activity | 1.02120594936422 | bayes_pls_golite062009 |
|
Region A: Residues: [150-226] |
1 11 21 31 41 51
| | | | | |
1 VPQIAIKSNA RGYVPPERWD EGINALLLGY SFSGANSIHS SADSDSGDSY FLNLNSGVNL 60
61 GPWRLRNNST WSRSSGQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [227-356] |
1 11 21 31 41 51
| | | | | |
1 TAEWKNLSSY LQRAVIPLKG ELTVGDDYTA GDFFDSVSFR GVQLASDDNM LPDSLKGFAP 60
61 VVRGIAKSNA QITIKQNGYT IYQTYVSPGA FEISDLYSTS SSGDLLVEIK EADGSVNSYS 120
121 VPFSSVPLLQ
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [357-436] |
1 11 21 31 41 51
| | | | | |
1 RQGRIKYAVT LAKYRTNSNE QQESKFAQAT LQWGGPWGTT WYGGGQYAEY YRAAMFGLGF 60
61 NLGDFGAISF DATQAKSTLA
|
| Detection Method: | |
| Confidence: | 3.09691 |
| Match: | 2dcjA |
| Description: | No description for 2dcjA was found. |
|
Region A: Residues: [437-754] |
1 11 21 31 41 51
| | | | | |
1 DQSEHKGQSY RFLYAKTLNH LGTNFQLMGY RYSTSGFYTL SDTMYKHMDG YEFNDGDDED 60
61 TPMWSRYYNL FYTKRGKLQV NISQQLGEYG SFYLSGSQQT YWHTDQQDRL LQFGYNTQIK 120
121 DLSLGISWNY SKSRGQPDAD QVFALNFSLP LNLLLPRSND SYTRKKNYAW MTSNTSIDNE 180
181 GHTTQNLGLT ETLLDDGNLS YSVQQGYNSE GKTANGSASM DYKGAFADAR VGYNYSDNGS 240
241 QQQLNYALSG SLVAHSQGIT LGQSLGETNV LIAAPGAENT RVANSTGLKT DWRGYTVVPY 300
301 ATSYRENRIA LDAASLKR
|
| Detection Method: | |
| Confidence: | 10.045757 |
| Match: | 2g7cA |
| Description: | No description for 2g7cA was found. |
|
Region A: Residues: [755-866] |
1 11 21 31 41 51
| | | | | |
1 NVDLENAVVN VVPTKGALVL AEFNAHAGAR VLMKTSKQGI PLRFGAIATL DGVQANSGII 60
61 DDDGSLYMAG LPAKGTISVR WGEAPDQICH INYELTEQQI NSAITRMDAI CR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
