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Protein Overview: YCBS_ECOLI

General Information:
Name(s) found: YCBS_ECOLI [Swiss-Prot]
Description(s) found:
Found 6 descriptions.
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  • Hypothetical outer membrane usher protein ycbS precursor - Escherichia coli [Swiss-Prot]
    • Organism: Escherichia coli
    Length: 866 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRTHRQHSL LSSGGVPSFI GGLVVFVSAA FNAQAETWFD PAFFKDDPSM VADLSRFEKG  60
   61 QKITPGVYRV DIVLNQTIVD TRNVNFVEIT PEKGIAACLT TESLDAMGVN TDAFPAFKQL 120
  121 DKQACVPLAE IIPDASVTFN VNKLRLEISV PQIAIKSNAR GYVPPERWDE GINALLLGYS 180
  181 FSGANSIHSS ADSDSGDSYF LNLNSGVNLG PWRLRNNSTW SRSSGQTAEW KNLSSYLQRA 240
  241 VIPLKGELTV GDDYTAGDFF DSVSFRGVQL ASDDNMLPDS LKGFAPVVRG IAKSNAQITI 300
  301 KQNGYTIYQT YVSPGAFEIS DLYSTSSSGD LLVEIKEADG SVNSYSVPFS SVPLLQRQGR 360
  361 IKYAVTLAKY RTNSNEQQES KFAQATLQWG GPWGTTWYGG GQYAEYYRAA MFGLGFNLGD 420
  421 FGAISFDATQ AKSTLADQSE HKGQSYRFLY AKTLNHLGTN FQLMGYRYST SGFYTLSDTM 480
  481 YKHMDGYEFN DGDDEDTPMW SRYYNLFYTK RGKLQVNISQ QLGEYGSFYL SGSQQTYWHT 540
  541 DQQDRLLQFG YNTQIKDLSL GISWNYSKSR GQPDADQVFA LNFSLPLNLL LPRSNDSYTR 600
  601 KKNYAWMTSN TSIDNEGHTT QNLGLTETLL DDGNLSYSVQ QGYNSEGKTA NGSASMDYKG 660
  661 AFADARVGYN YSDNGSQQQL NYALSGSLVA HSQGITLGQS LGETNVLIAA PGAENTRVAN 720
  721 STGLKTDWRG YTVVPYATSY RENRIALDAA SLKRNVDLEN AVVNVVPTKG ALVLAEFNAH 780
  781 AGARVLMKTS KQGIPLRFGA IATLDGVQAN SGIIDDDGSL YMAGLPAKGT ISVRWGEAPD 840
  841 QICHINYELT EQQINSAITR MDAICR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..149] PSI-BLAST 32.0 Crystal Structure of the Ternary Complex of FIMD (N-Terminal Domain) with FIMC and the Pilin Domain of FIMH
    2 View Details [150..226] deduced N/A No confident structure predictions are available.
    3 View Details [227..356] MSA 2.305985 View MSA. No confident structure predictions are available.
    4 View Details [357..436] PSI-BLAST 3.09691 No description for 2dcjA was found.
    5 View Details [437..754] PSI-BLAST 10.045757 No description for 2g7cA was found.
    6 View Details [755..866] MSA 1.291978 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • fimbrial usher porin activity
    		•  3.07403393180075 bayes_pls_golite062009
  • porin activity
    		•  1.02120594936422 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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