YRC Public Data Repository - Protein Structure Prediction

Protein:	FIU_ECOLI, YBIL_...
Organism:	Escherichia coli
Length:	760 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FIU_ECOLI, YBIL_....

Description	E-value	Query Range	Subject Range
FIU_ECOL6 - Catecholate siderophore receptor Fiu OS=Escherichia coli O6 GN=fiu PE=3 SV=1 FIU_ECOL6 - Catecholate siderophore receptor Fiu OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) ...	470.0	[0..1]	[760..1]
FIU_ECOUT - Catecholate siderophore receptor Fiu OS=Escherichia coli (strain UTI89 / UPEC) GN=fiu PE=3 SV=1 gi\|237707235, gi... - gi\|237707235\|ref\|ZP_04537716.1\| catecholate siderophore receptor fiu [Escherichia sp. 3_2_53FAA], gi...	470.0	[0..1]	[760..1]
gi\|115512110, gi... - gi\|117622986\|ref\|YP_851899.1\| catecholate siderophore receptor Fiu [Escherichia coli APEC O1], gi\|11...	470.0	[0..1]	[760..1]
gi\|191166148, gi... - gi\|75230648\|ref\|ZP_00717119.1\| COG4774: Outer membrane receptor for monomeric catechols [Escherichia...	470.0	[0..1]	[760..1]
gi\|194413785, gi... - gi\|75210600\|ref\|ZP_00710748.1\| COG4774: Outer membrane receptor for monomeric catechols [Escherichia... gi\|75189846, gi\|... - gi\|75189846\|ref\|ZP_00703113.1\| COG4774: Outer membrane receptor for monomeric catechols [Escherichia... gi\|209911311, gi... - gi\|209918052\|ref\|YP_002292136.1\| catecholate siderophore receptor Fiu [Escherichia coli SE11], gi\|20...	469.0	[0..1]	[760..1]
gi\|253774192, gi... - gi\|254287696\|ref\|YP_003053444.1\| predicted iron outer membrane transporter [Escherichia coli BL21(DE... gi\|242376597, gi... - gi\|251784324\|ref\|YP_002998628.1\| hypothetical protein B21_00789 [Escherichia coli BL21], gi\|24237659... gi\|253972783, gi... - gi\|254160882\|ref\|YP_003043990.1\| predicted iron outer membrane transporter [Escherichia coli B str. ... gi\|194438407, gi... - gi\|83586108\|ref\|ZP_00924745.1\| COG4774: Outer membrane receptor for monomeric catechols [Escherichia...	469.0	[0..1]	[760..1]
gi\|192928935, gi... - gi\|75257597\|ref\|ZP_00729094.1\| COG4774: Outer membrane receptor for monomeric catechols [Escherichia...	469.0	[0..1]	[760..1]
gi\|218351011, gi... - gi\|218694279\|ref\|YP_002401946.1\| catecholate siderophore receptor Fiu [Escherichia coli 55989], gi\|2... gi\|75236137, gi\|... - gi\|75236137\|ref\|ZP_00720261.1\| COG4774: Outer membrane receptor for monomeric catechols [Escherichia...	469.0	[0..1]	[760..1]
gi\|75238140, gi\|... - gi\|75238140\|ref\|ZP_00722144.1\| COG4774: Outer membrane receptor for monomeric catechols [Escherichia...	469.0	[0..1]	[760..1]
gi\|189002996, gi... - gi\|189002996\|gb\|EDU71982.1\| catecholate siderophore receptor Fiu [Escherichia coli O157:H7 str. EC40... gi\|187767505, gi... - gi\|187767505\|gb\|EDU31349.1\| catecholate siderophore receptor Fiu [Escherichia coli O157:H7 str. EC41... gi\|189377722, gi... - gi\|189377722\|gb\|EDU96138.1\| catecholate siderophore receptor Fiu [Escherichia coli O157:H7 str. EC50... gi\|189373143, gi... - gi\|189373143\|gb\|EDU91559.1\| catecholate siderophore receptor Fiu [Escherichia coli O157:H7 str. EC86... gi\|168756592, gi... - gi\|189356233\|gb\|EDU74652.1\| catecholate siderophore receptor Fiu [Escherichia coli O157:H7 str. EC44... gi\|168767308, gi... - gi\|189363353\|gb\|EDU81772.1\| catecholate siderophore receptor Fiu [Escherichia coli O157:H7 str. EC44... gi\|189365680, gi... - gi\|189365680\|gb\|EDU84096.1\| catecholate siderophore receptor Fiu [Escherichia coli O157:H7 str. EC45... gi\|13360342, gi\|... - gi\|15830137\|ref\|NP_308910.1\| catecholate siderophore receptor Fiu [Escherichia coli O157:H7 str. Sak... gi\|209775850, gi... - pir\|\|E85589 hypothetical protein Z1026 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|12513801, gi\|... - gi\|15800557\|ref\|NP_286569.1\| catecholate siderophore receptor Fiu [Escherichia coli O157:H7 EDL933],... FIU_ECO57 - Catecholate siderophore receptor Fiu OS=Escherichia coli O157:H7 GN=fiu PE=3 SV=1 gi\|254792000, gi... - gi\|254792000\|ref\|YP_003076837.1\| predicted iron outer membrane transporter [Escherichia coli O157:H7... gi\|217325129, gi... - gi\|217325129\|ref\|ZP_03441213.1\| catecholate siderophore receptor Fiu [Escherichia coli O157:H7 str. ... gi\|208815296, gi... - gi\|208815296\|ref\|ZP_03256475.1\| catecholate siderophore receptor Fiu [Escherichia coli O157:H7 str. ... gi\|195936845 - gi\|195936845\|ref\|ZP_03082227.1\| catecholate siderophore receptor Fiu [Escherichia coli O157:H7 str. ... gi\|209397104, gi... - gi\|209397104\|ref\|YP_002269475.1\| catecholate siderophore receptor Fiu [Escherichia coli O157:H7 str.... gi\|208737632, gi... - gi\|208822147\|ref\|ZP_03262466.1\| catecholate siderophore receptor Fiu [Escherichia coli O157:H7 str. ...	468.0	[0..1]	[760..1]

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Predicted Domain #1

Region A:
Residues: [1-760]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENNRNFPAR QFHSLTFFAG LCIGITPVAQ ALAAEGQTNA DDTLVVEAST PSLYAPQQSA  60
   61 DPKFSRPVAD TTRTMTVISE QVIKDQGATN LTDALKNVPG VGAFFAGENG NSTTGDAIYM 120
  121 RGADTSNSIY IDGIRDIGSV SRDTFNTEQV EVIKGPSGTD YGRSAPTGSI NMISKQPRND 180
  181 SGIDASASIG SAWFRRGTLD VNQVIGDTTA VRLNVMGEKT HDAGRDKVKN ERYGVAPSVA 240
  241 FGLGTANRLY LNYLHVTQHN TPDGGIPTIG LPGYSAPSAG TAALNHSGKV DTHNFYGTDS 300
  301 DYDDSTTDTA TMRFEHDIND NTTIRNTTRW SRVKQDYLMT AIMGGASNIT QPTSDVNSWT 360
  361 WSRTANTKDV SNKILTNQTN LTSTFYTGSI GHDVSTGVEF TRETQTNYGV NPVTLPAVNI 420
  421 YHPDSSIHPG GLTRNGANAN GQTDTFAIYA FDTLQITRDF ELNGGIRLDN YHTEYDSATA 480
  481 CGGSGRGAIT CPTGVAKGSP VTTVDTAKSG NLMNWKAGAL YHLTENGNVY INYAVSQQPP 540
  541 GGNNFALAQS GSGNSANRTD FKPQKANTSE IGTKWQVLDK RLLLTAALFR TDIENEVEQN 600
  601 DDGTYSQYGK KRVEGYEISV AGNITPAWQV IGGYTQQKAT IKNGKDVAQD GSSSLPYTPE 660
  661 HAFTLWSQYQ ATDDISVGAG ARYIGSMHKG SDGAVGTPAF TEGYWVADAK LGYRVNRNLD 720
  721 FQLNVYNLFD TDYVASINKS GYRYHPGEPR TFLLTANMHF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.221849
Match:	1by3A
Description:	Ferric hydroxamate uptake receptor FhuA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	4.15398171369398	bayes_pls_golite062009
substrate-specific transporter activity	2.68814220960531	bayes_pls_golite062009
transmembrane transporter activity	1.99898520864149	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.6238541892786	bayes_pls_golite062009
metal ion transmembrane transporter activity	1.57680952943132	bayes_pls_golite062009
ion transmembrane transporter activity	1.25335525585766	bayes_pls_golite062009
cation transmembrane transporter activity	1.16765906810619	bayes_pls_golite062009
porin activity	0.896682978257159	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.845780974441309	bayes_pls_golite062009
binding	0.643879907209189	bayes_pls_golite062009
receptor activity	0.622265213248342	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.17491456011246	bayes_pls_golite062009
lipid transporter activity	0.10911346172326	bayes_pls_golite062009
channel activity	0.0647076360772156	bayes_pls_golite062009
passive transmembrane transporter activity	0.0647076360772156	bayes_pls_golite062009
protein binding	0.0112080975548029	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: