YRC Public Data Repository - Protein Structure Prediction

Protein:	YBAZ_ECOLI
Organism:	Escherichia coli
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBAZ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|71280774, gi\|... - gi\|71280774\|ref\|YP_266923.1\| methylated-DNA--protein-cysteine methyltransferase [Colwellia psychrery...	168.0	[0..1]	[116..48]
gi\|219992970, gi... - gi\|89209726\|ref\|ZP_01188121.1\| Methylated-DNA-(protein)-cysteine S-methyltransferase [Halothermothri...	164.0	[0..5]	[110..58]
gi\|88780111, gi\|... - gi\|88797242\|ref\|ZP_01112832.1\| methylated-DNA-protein-cysteine S-methyltransferase [Reinekea sp. MED...	163.0	[0..2]	[111..51]
OGT_METAC - Methylated-DNA--protein-cysteine methyltransferase OS=Methanosarcina acetivorans GN=ogt PE=3 SV=1 OGT_METAC - Methylated-DNA--protein-cysteine methyltransferase OS=Methanosarcina acetivorans (strain ATCC 35395 ...	163.0	[0..2]	[111..50]
gi\|215410956, gi... - gi\|215410957\|ref\|ZP_03419765.1\| methylated-DNA--protein-cysteine methyltransferase [Mycobacterium tu... gi\|215403161, gi... - gi\|215403161\|ref\|ZP_03415342.1\| methylated-DNA--protein-cysteine methyltransferase [Mycobacterium tu... OGT_MYCTU - Methylated-DNA--protein-cysteine methyltransferase OS=Mycobacterium tuberculosis GN=ogt PE=1 SV=1 gi\|215430201 - gi\|215430201\|ref\|ZP_03428120.1\| methylated-DNA--protein-cysteine methyltransferase [Mycobacterium tu... gi\|215426644 - gi\|215426644\|ref\|ZP_03424563.1\| methylated-DNA--protein-cysteine methyltransferase [Mycobacterium tu... gi\|218753025 - gi\|218753025\|ref\|ZP_03531821.1\| methylated-DNA--protein-cysteine methyltransferase [Mycobacterium tu... gi\|121637246, gi... - gi\|121637246\|ref\|YP_977469.1\| putative methylated-DNA--protein-cysteine methyltransferase ogt [Mycob... gi\|215445494 - gi\|215445494\|ref\|ZP_03432246.1\| methylated-DNA--protein-cysteine methyltransferase [Mycobacterium tu... gi\|224989720, gi... - gi\|224989720\|ref\|YP_002644407.1\| putative methylated-DNA--protein-cysteine methyltransferase [Mycoba... OGT_MYCTO - Methylated-DNA--protein-cysteine methyltransferase OS=Mycobacterium tuberculosis (strain CDC 1551 / ... gi\|253321141, gi... - gi\|253799638\|ref\|YP_003032639.1\| methylated-DNA-protein-cysteine methyltransferase ogt [Mycobacteriu... gi\|254550324 - gi\|254550324\|ref\|ZP_05140771.1\| methylated-DNA--protein-cysteine methyltransferase [Mycobacterium tu... gi\|254815123 - gi\|254815123\|ref\|ZP_05220124.1\| methylated-DNA--protein-cysteine methyltransferase [Mycobacterium tu... gi\|255096099 - gi\|255096099\|ref\|ZP_05325577.1\| methylated-DNA--protein-cysteine methyltransferase [Mycobacterium tu... gi\|119701175, gi... - gi\|76784875\|ref\|ZP_00772055.1\| COG0350: Methylated DNA-protein cysteine methyltransferase [Mycobacte... gi\|81254727 - gi\|81254727\|ref\|ZP_00879236.1\| COG0350: Methylated DNA-protein cysteine methyltransferase [Mycobacte... gi\|167967588, gi... - gi\|167967588\|ref\|ZP_02549865.1\| methylated-DNA-protein-cysteine methyltransferase ogt [Mycobacterium... OGT_MYCTU - Methylated-DNA--protein-cysteine methyltransferase OS=Mycobacterium tuberculosis (strain ATCC 25618 ... OGT_MYCBO - Methylated-DNA--protein-cysteine methyltransferase OS=Mycobacterium bovis GN=ogt PE=3 SV=1 OGT_MYCBO - Methylated-DNA--protein-cysteine methyltransferase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2...	162.0	[0..2]	[110..50]
gi\|13880961, gi\|... - gi\|15840768\|ref\|NP_335805.1\| methylated-DNA--protein-cysteine methyltransferase [Mycobacterium tuber...	162.0	[0..2]	[110..58]
gi\|33152202, gi\|... - gi\|33152202\|ref\|NP_873555.1\| methylated-DNA--protein-cysteine S-methyltransferase [Haemophilus ducre...	162.0	[0..6]	[127..63]
gi\|62423890 - gi\|62423890\|ref\|ZP_00379045.1\| COG0350: Methylated DNA-protein cysteine methyltransferase [Brevibact...	161.0	[0..2]	[129..69]
gi\|114308232, gi... - gi\|71548586\|ref\|ZP_00668810.1\| Methylated-DNA-(protein)-cysteine S-methyltransferase [Nitrosomonas e...	161.0	[0..2]	[110..55]
gi\|167036637, gi... - gi\|76796157\|ref\|ZP_00778524.1\| Methylated-DNA-(protein)-cysteine S-methyltransferase [Thermoanaeroba... gi\|114845299, gi... - gi\|167039287\|ref\|YP_001662272.1\| methylated-DNA--protein-cysteine methyltransferase [Thermoanaerobac... gi\|242232317, gi... - gi\|242256119\|ref\|ZP_04801015.1\| methylated-DNA/protein-cysteine methyltransferase [Thermoanaerobacte... gi\|241903601, gi... - gi\|241903601\|ref\|ZP_04788322.1\| methylated-DNA/protein-cysteine methyltransferase [Thermoanaerobacte...	160.0	[0..2]	[115..48]

Back

Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVSCAMRLH SGVFPDYAEK LPQEEKMEKE DSFPQRVWQI VAAIPEGYVT TYGDVAKLAG  60
   61 SPRAARQVGG VLKRLPEGST LPWHRVVNRH GTISLTGPDL QRQRQALLAE GVMVSGSGQI 120
  121 DLQRYRWNY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	1t39A
Description:	HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE COVALENTLY CROSSLINKED TO DNA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methylated-DNA-[protein]-cysteine S-methyltransferase activity	3.81641972619245	bayes_pls_golite062009
S-methyltransferase activity	2.66007025371147	bayes_pls_golite062009
transferase activity	1.93166534470568	bayes_pls_golite062009
catalytic activity	1.90838528948382	bayes_pls_golite062009
DNA binding	1.54553435062678	bayes_pls_golite062009
nucleic acid binding	1.49720271661049	bayes_pls_golite062009
binding	1.30758209326705	bayes_pls_golite062009
transcription regulator activity	1.26332746912934	bayes_pls_golite062009
methyltransferase activity	1.14625481859451	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.13184530961695	bayes_pls_golite062009
transcription factor activity	0.99095733801135	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: