YRC Public Data Repository - Protein Structure Prediction

Protein:	YAGF_ECOLI
Organism:	Escherichia coli
Length:	655 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAGF_ECOLI.

Description	E-value	Query Range	Subject Range
ILVD_VIBPA - Dihydroxy-acid dehydratase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=ilvD P... ILVD_VIBPA - Dihydroxy-acid dehydratase OS=Vibrio parahaemolyticus GN=ilvD PE=3 SV=1	715.0	[0..45]	[643..4]
gi\|91226246, gi\|... - gi\|91226246\|ref\|ZP_01261086.1\| dihydroxy-acid dehydratase [Vibrio alginolyticus 12G01], gi\|91189257\|...	715.0	[0..45]	[643..4]
gi\|254229982, gi... - gi\|254229982\|ref\|ZP_04923383.1\| dihydroxy-acid dehydratase [Vibrio sp. Ex25], gi\|194538929\|ref\|YP_00...	712.0	[0..45]	[643..4]
ILVD_PSE14 - Dihydroxy-acid dehydratase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=ilv...	709.0	[0..45]	[646..4]
gi\|89074745, gi\|... - gi\|89074745\|ref\|ZP_01161203.1\| dihydroxy-acid dehydratase [Photobacterium sp. SKA34], gi\|89049509\|gb...	708.0	[0..45]	[643..4]
gi\|90581159, gi\|... - gi\|90581159\|ref\|ZP_01236958.1\| dihydroxy-acid dehydratase [Vibrio angustum S14], gi\|90437680\|gb\|EAS6...	708.0	[0..45]	[643..4]
ILVD_PSESM - Dihydroxy-acid dehydratase OS=Pseudomonas syringae pv. tomato GN=ilvD PE=3 SV=1 ILVD_PSESM - Dihydroxy-acid dehydratase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=ilvD PE=3 SV=1	707.0	[0..45]	[646..4]
ILVD_METFK - Dihydroxy-acid dehydratase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=ilv...	707.0	[0..45]	[644..4]
ILVD_VIBVU - Dihydroxy-acid dehydratase OS=Vibrio vulnificus (strain CMCP6) GN=ilvD PE=3 SV=1 ILVD_VIBVU - Dihydroxy-acid dehydratase OS=Vibrio vulnificus GN=ilvD PE=3 SV=1	706.0	[0..45]	[643..4]
ILVD_VIBVY - Dihydroxy-acid dehydratase OS=Vibrio vulnificus (strain YJ016) GN=ilvD PE=3 SV=1	706.0	[0..45]	[643..4]

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Predicted Domain #1

Region A:
Residues: [1-655]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIEKIFTPQ DDAFYAVITH AAGPQGALPL TPQMLMESPS GNLFGMTQNA GMGWDANKLT  60
   61 GKEVLIIGTQ GGIRAGDGRP IALGYHTGHW EIGMQMQAAA KEITRNGGIP FAAFVSDPCD 120
  121 GRSQGTHGMF DSLPYRNDAA IVFRRLIRSL PTRRAVIGVA TCDKGLPATM IALAAMHDLP 180
  181 TILVPGGATL PPTVGEDAGK VQTIGARFAN HELSLQEAAE LGCRACASPG GGCQFLGTAG 240
  241 TSQVVAEALG LALPHSALAP SGQAVWLEIA RQSARAVSEL DSRGITTRDI LSDKAIENAM 300
  301 VIHAAFGGST NLLLHIPAIA HAAGCTIPDV EHWTRINRKV PRLVSVLPNG PDYHPTVRAF 360
  361 LAGGVPEVML HLRDLGLLHL DAMTVTGQTV GENLEWWQAS ERRARFRQCL REQDGVEPDD 420
  421 VILPPEKAKA KGLTSTVCFP TGNIAPEGSV IKATAIDPSV VGEDGVYHHT GRVRVFVSEA 480
  481 QAIKAIKREE IVQGDIMVVI GGGPSGTGME ETYQLTSALK HISWGKTVSL ITDARFSGVS 540
  541 TGACFGHVSP EALAGGPIGK LRDNDIIEIA VDRLTLTGSV NFIGTADNPL TPEEGARELA 600
  601 RRQTHPDLHA HDFLPDDTRL WAALQSVSGG TWKGCIYDTD KIIEVINAGK KALGI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	163.0
Match:	2gp4A
Description:	No description for 2gp4A was found.

Predicted functions:

Term	Confidence	Notes
phosphogluconate dehydratase activity	6.35859617166212	bayes_pls_golite062009
3-isopropylmalate dehydratase activity	4.12520779605632	bayes_pls_golite062009
catalytic activity	1.99003321006923	bayes_pls_golite062009
dihydroxy-acid dehydratase activity	1.86041876362237	bayes_pls_golite062009
lyase activity	1.77649447753579	bayes_pls_golite062009
carbon-oxygen lyase activity	1.77249348870989	bayes_pls_golite062009
hydro-lyase activity	1.68972070574507	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: