YRC Public Data Repository - Protein Structure Prediction

Protein:	YAGE_ECOLI
Organism:	Escherichia coli
Length:	309 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAGE_ECOLI.

Description	E-value	Query Range	Subject Range
DAPA_BARBK - 4-hydroxy-tetrahydrodipicolinate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN...	361.0	[0..13]	[308..1]
gi\|241906440, gi... - gi\|241906440\|ref\|ZP_04791022.1\| dihydrodipicolinate synthase [Desulfovibrio vulgaris RCH1], gi\|24188... DAPA_DESVV - 4-hydroxy-tetrahydrodipicolinate synthase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=... DAPA_DESVH - 4-hydroxy-tetrahydrodipicolinate synthase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 295...	347.0	[0..12]	[308..1]
DAPA_AQUAE - Dihydrodipicolinate synthase OS=Aquifex aeolicus GN=dapA PE=1 SV=1 DAPA_AQUAE - 4-hydroxy-tetrahydrodipicolinate synthase OS=Aquifex aeolicus (strain VF5) GN=dapA PE=1 SV=1	345.0	[0..13]	[308..1]
DAPA_METJA - Dihydrodipicolinate synthase OS=Methanocaldococcus jannaschii GN=dapA PE=1 SV=1 DAPA_METJA - 4-hydroxy-tetrahydrodipicolinate synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM ...	345.0	[0..13]	[308..1]
DAPA_THEMA - 4-hydroxy-tetrahydrodipicolinate synthase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 310... DAPA_THEMA - Dihydrodipicolinate synthase OS=Thermotoga maritima GN=dapA PE=1 SV=1	344.0	[0..13]	[308..1]
gi\|37927075, gi\|... - gi\|37927076\|pdb\|1O5K\|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase (Tm1521) From Ther...	342.0	[0..1]	[308..1]
gi\|90420852, gi\|... - gi\|90420852\|ref\|ZP_01228757.1\| dihydrodipicolinate synthase [Aurantimonas sp. SI85-9A1], gi\|90334827... gi\|90420852, gi\|... - gi\|90420852\|ref\|ZP_01228757.1\| dihydrodipicolinate synthase [Aurantimonas sp. SI85-9A1], gi\|90334827...	342.0	[0..13]	[308..1]
DAPA_METKA - Dihydrodipicolinate synthase OS=Methanopyrus kandleri GN=dapA PE=3 SV=1 DAPA_METKA - 4-hydroxy-tetrahydrodipicolinate synthase OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 963...	340.0	[0..14]	[308..5]
gi\|91202476 - gi\|91202476\|emb\|CAJ72115.1\| strongly similar to dihydropicolinate synthase (DHDPS) [Candidatus Kuene...	340.0	[0..13]	[308..1]
DAPA_CHESB - 4-hydroxy-tetrahydrodipicolinate synthase OS=Chelativorans sp. (strain BNC1) GN=dapA PE=3 SV=1	339.0	[0..13]	[308..1]

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Predicted Domain #1

Region A:
Residues: [1-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQQGDLMPQ SALFTGIIPP VSTIFTADGQ LDKPGTAALI DDLIKAGVDG LFFLGSGGEF  60
   61 SQLGAEERKA IARFAIDHVD RRVPVLIGTG GTNARETIEL SQHAQQAGAD GIVVINPYYW 120
  121 KVSEANLIRY FEQVADSVTL PVMLYNFPAL TGQDLTPALV KTLADSRSNI IGIKDTIDSV 180
  181 AHLRSMIHTV KGAHPHFTVL CGYDDHLFNT LLLGGDGAIS ASGNFAPQVS VNLLKAWRDG 240
  241 DVAKAAGYHQ TLLQIPQMYQ LDTPFVNVIK EAIVLCGRPV STHVLPPASP LDEPRKAQLK 300
  301 TLLQQLKLC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	95.154902
Match:	2ehhA
Description:	No description for 2ehhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits