YRC Public Data Repository - Protein Structure Prediction

Protein:	YABJ_BACSU
Organism:	Bacillus subtilis
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YABJ_BACSU.

Description	E-value	Query Range	Subject Range
gi\|3257265, gi\|1... - gi\|3257265\|dbj\|BAA29948.1\| 137aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14590714\|... gi\|7444996 - gi\|7444996\|pir\|\|B71136 hypothetical protein PH0854 - Pyrococcus horikoshii	185.0	[0..2]	[124..14]
Y854_PYRHO - UPF0076 protein PH0854 OS=Pyrococcus horikoshii GN=PH0854 PE=1 SV=2 Y854_PYRHO - RutC family protein PH0854 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBR...	185.0	[0..2]	[124..3]
RIDA_PYRFU - 2-iminobutanoate/2-iminopropanoate deaminase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / ...	183.0	[0..2]	[124..3]
Y1251_PYRAB, YC5... - (Q9UZA3) Hypothetical UPF0076 protein PYRAB12510, UPF0076 protein PYRAB12510 OS=Pyrococcus abyssi GN... Y1251_PYRAB - RutC family protein PYRAB12510 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB12510 PE=3 SV=1	178.0	[0..2]	[124..4]
gi\|34482639 - gi\|34482639\|emb\|CAE09639.1\| TRANSLATION INITIATION INHIBITOR [Wolinella succinogenes] gi\|34556924 - gi\|34556924\|ref\|NP_906739.1\| translation initiation inhibitor [Wolinella succinogenes DSM 1740]	176.0	[0..2]	[121..2]
gi\|89211378, gi\|... - gi\|89211378\|ref\|ZP_01189746.1\| YjgF-like protein [Halothermothrix orenii H 168], gi\|89159023\|gb\|EAR7...	175.0	[0..4]	[123..6]
gi\|52346407, gi\|... - gi\|52783905\|ref\|YP_089734.1\| YabJ [Bacillus licheniformis ATCC 14580], gi\|52346407\|gb\|AAU39041.1\| Ya...	174.0	[0..1]	[124..2]
gi\|56378418, gi\|... - gi\|56418576\|ref\|YP_145894.1\| translation initiation inhibitor [Geobacillus kaustophilus HTA426], gi\|... gi\|221088012, gi... - gi\|221088012\|ref\|ZP_03557546.1\| endoribonuclease L-PSP [Geobacillus sp. Y412MC61], gi\|220708005\|gb\|E... gi\|229329342, gi... - gi\|229499758\|ref\|ZP_04393438.1\| endoribonuclease L-PSP [Geobacillus sp. Y412MC52], gi\|229329342\|gb\|E...	174.0	[0..2]	[123..2]
gi\|221312179 - gi\|221312179\|ref\|ZP_03593984.1\| hypothetical protein BsubsN3_00240 [Bacillus subtilis subsp. subtili... YABJ_BACSU - RutC family protein yabJ OS=Bacillus subtilis GN=yabJ PE=1 SV=3 RIDA_BACSU - 2-iminobutanoate/2-iminopropanoate deaminase OS=Bacillus subtilis (strain 168) GN=yabJ PE=1 SV=3 gi\|221317112 - gi\|221317112\|ref\|ZP_03598406.1\| hypothetical protein BsubsJ_00240 [Bacillus subtilis subsp. subtilis... gi\|221321375 - gi\|221321375\|ref\|ZP_03602669.1\| hypothetical protein BsubsS_00240 [Bacillus subtilis subsp. subtilis...	173.0	[0..1]	[124..2]
gi\|145952961, gi... - gi\|90573901\|ref\|ZP_01230409.1\| hypothetical protein CdifQ_02002769 [Clostridium difficile QCD-32g58]... gi\|255651025 - gi\|255651025\|ref\|ZP_05397927.1\| putative translation inhibitor endoribonuclease [Clostridium diffici... gi\|115251566, gi... - gi\|126700129\|ref\|YP_001089026.1\| putative translation inhibitor endoribonuclease [Clostridium diffic... gi\|255656496 - gi\|255656496\|ref\|ZP_05401905.1\| putative translation inhibitor endoribonuclease [Clostridium diffici... gi\|255101674 - gi\|255101674\|ref\|ZP_05330651.1\| putative translation inhibitor endoribonuclease [Clostridium diffici... gi\|255307543 - gi\|255307543\|ref\|ZP_05351714.1\| putative translation inhibitor endoribonuclease [Clostridium diffici... gi\|255315240 - gi\|255315240\|ref\|ZP_05356823.1\| putative translation inhibitor endoribonuclease [Clostridium diffici... gi\|255517909 - gi\|255517909\|ref\|ZP_05385585.1\| putative translation inhibitor endoribonuclease [Clostridium diffici... gi\|254976108 - gi\|254976108\|ref\|ZP_05272580.1\| putative translation inhibitor endoribonuclease [Clostridium diffici... gi\|255093498 - gi\|255093498\|ref\|ZP_05322976.1\| putative translation inhibitor endoribonuclease [Clostridium diffici...	173.0	[0..2]	[123..4]

Back

Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TKAVHTKHAP AAIGPYSQGI IVNNMFYSSG QIPLTPSGEM VNGDIKEQTH QVFSNLKAVL  60
   61 EEAGASFETV VKATVFIADM EQFAEVNEVY GQYFDTHKPA RSCVEVARLP KDALVEIEVI 120
  121 ALVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.0
Match:	1qd9A
Description:	Purine regulatory protein YabJ
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ribonuclease activity	5.19435575508494	bayes_pls_golite062009
endoribonuclease activity	3.76425533948565	bayes_pls_golite062009
endonuclease activity	3.57078287701774	bayes_pls_golite062009
nuclease activity	1.95684086528131	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	1.90373737530073	bayes_pls_golite062009
binding	1.87868720745411	bayes_pls_golite062009
hydrolase activity	1.86428296839828	bayes_pls_golite062009
catalytic activity	1.00848565859536	bayes_pls_golite062009
protein binding	0.378484263251583	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: