YRC Public Data Repository - Protein Structure Prediction

Protein:	Y108_SYNY3
Organism:	Synechocystis sp. PCC 6803
Length:	507 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y108_SYNY3.

Description	E-value	Query Range	Subject Range
gi\|66847348, gi\|... - gi\|70989735\|ref\|XP_749717.1\| ammonium transporter MeaA [Aspergillus fumigatus Af293], gi\|66847348\|gb...	437.0	[0..59]	[498..21]
gi\|111064493 - gi\|111064493\|gb\|EAT85613.1\| hypothetical protein SNOG_06962 [Phaeosphaeria nodorum SN15]	429.0	[0..62]	[503..13]
gi\|67900952, gi\|... - gi\|67900952\|ref\|XP_680732.1\| hypothetical protein AN7463.2 [Aspergillus nidulans FGSC A4], ref\|XP_41... gi\|18693013 - gi\|18693013\|gb\|AAL73117.1\| ammonium transporter MEAA [Emericella nidulans]	428.0	[0..66]	[498..27]
gi\|46120163, gi\|... - gi\|67920390\|ref\|ZP_00513910.1\| Ammonium transporter [Crocosphaera watsonii WH 8501], gi\|67857874\|gb\|...	426.0	[0..30]	[503..13]
gi\|90306017, gi\|... - gi\|90306017\|gb\|EAS35648.1\| hypothetical protein CIMG_01002 [Coccidioides immitis RS], gi\|119193250\|r...	424.0	[0..59]	[498..16]
gi\|38101985, gi\|... - gi\|39974633\|ref\|XP_368707.1\| hypothetical protein MGG_00537 [Magnaporthe grisea 70-15], gb\|EAA48879....	424.0	[0..58]	[498..6]
gi\|17221150 - gi\|17221150\|gb\|AAL11032.1\| high affinity ammonium transporter [Tuber borchii]	423.0	[0..73]	[501..22]
gi\|83773994 - gi\|83773994\|dbj\|BAE64119.1\| unnamed protein product [Aspergillus oryzae] gi\|169781578 - gi\|169781578\|ref\|XP_001825252.1\| hypothetical protein [Aspergillus oryzae RIB40]	422.0	[0..69]	[505..12]
gi\|85112788 - gi\|85112788\|ref\|XP_964410.1\| ammonium transporter MEP1 [Neurospora crassa OR74A] gi\|28926191, gi\|... - gi\|32420499\|ref\|XP_330693.1\| hypothetical protein [Neurospora crassa], gi\|28926191\|gb\|EAA35174.1\| am...	422.0	[0..69]	[498..15]

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Predicted Domain #1

Region A:
Residues: [1-507]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNSILSKLN VGERSPVNRT HSSRTEAEKS SLFRFVRRKI NSPWLACVPL TALIVAIWNA  60
   61 AAIAQDTEIV NITVETVNEN VATLQGTLNA IWILIAAILV IFMNAGFGML ETGLCRQKNA 120
  121 VNILTKNLIV FALATIAYWA IGFSLMFGSS GNPFVGFGGF FLSGDHTNYG LSPFPEGLPV 180
  181 AVFFLFQVAF SATAATIVSG AVAERIKFNE FLIFSVLLVG IAYPITGHWV WDAGGWLYTM 240
  241 GFMDFAGSTV VHSVGGWAAL AGAFLLGPRL GKFVDGRPGA IPGHNMGFAM LGCLILWIGW 300
  301 FGFNPGSQLA ADQACAYIAV TTNLAASAGG LTATFTSWLK DGKPDLTMVI NGVLAGLVGI 360
  361 TAGCAGVSYW GSVIIGGIAG ILVVYSVAFF DKIKIDDPVG AISVHLVNGV WGTLAVGFFN 420
  421 MEKGLFYGGG INQLIIQIVG ILAIGAFTAI FSFVVWAILK QTMGIRVSGE EEMIGLDIGE 480
  481 HGMEAYTGFV KETDSFGSAV SGATVPE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	102.0
Match:	1xqeA
Description:	The mechanism of ammonia transport based on the crystal structure of AmtB of E. coli.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ammonium transmembrane transporter activity	10.0624820335928	bayes_pls_golite062009
organic cation transmembrane transporter activity	9.07420898067257	bayes_pls_golite062009
cation transmembrane transporter activity	7.57181833547312	bayes_pls_golite062009
ion transmembrane transporter activity	7.46308808953548	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	7.08971867997216	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	7.03159982829686	bayes_pls_golite062009
transporter activity	5.3870893301235	bayes_pls_golite062009
transmembrane transporter activity	5.3046132351753	bayes_pls_golite062009
substrate-specific transporter activity	5.16067985999244	bayes_pls_golite062009
methylammonium transmembrane transporter activity	4.23822940190415	bayes_pls_golite062009
active transmembrane transporter activity	1.08017669832334	bayes_pls_golite062009
high affinity secondary active ammonium transmembrane transporter activity	0.499461838170411	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: