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View Structure Prediction Details

Protein: XDHA_ECOLI
Organism: Escherichia coli
Length: 752 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XDHA_ECOLI.

Description E-value Query
Range
Subject
Range
ry-PA - The gene rosy is referred to in FlyBase by the symbol Dmel\ry (CG7642, FBgn0003308). It is a protein...
gi|34105727 - gi|34105727|gb|AAQ62072.1| ROSY [Transformation vector pICon]
757.0 [0..1] [749..580]
gi|110283405, gi... - gi|69278799|ref|ZP_00613807.1| Carbon-monoxide dehydrogenase [Mesorhizobium sp. BNC1], gi|68190381|g...
757.0 [0..2] [747..12]
gi|33391858 - gi|33391858|gb|AAQ17528.1| xanthine dehydrogenase [Drosophila yakuba]
754.0 [0..1] [749..566]
gi|33391854 - gi|33391854|gb|AAQ17526.1| xanthine dehydrogenase [Drosophila simulans]
753.0 [0..1] [749..566]
gi|86571066, gi|... - gi|86748038|ref|YP_484534.1| carbon-monoxide dehydrogenase large subunit [Rhodopseudomonas palustris...
753.0 [0..1] [749..11]
gi|33391856 - gi|33391856|gb|AAQ17527.1| xanthine dehydrogenase [Drosophila teissieri]
753.0 [0..1] [749..566]
gi|33391864 - gi|33391864|gb|AAQ17531.1| xanthine dehydrogenase [Drosophila eugracilis]
753.0 [0..1] [749..566]
gi|33391862 - gi|33391862|gb|AAQ17530.1| xanthine dehydrogenase [Drosophila orena]
750.0 [0..1] [748..566]
gi|33391860 - gi|33391860|gb|AAQ17529.1| xanthine dehydrogenase [Drosophila erecta]
750.0 [0..1] [749..566]

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Predicted Domain #1
Region A:
Residues: [1-752]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVDAIAKVT GRARYTDDYV MAGMCYAKYV RSPIAHGYAV SINDEQARSL PGVLAIFTWE  60
   61 DVPDIPFATA GHAWTLDENK RDTADRALLT RHVRHHGDAV AIVVARDELT AEKAAQLVSI 120
  121 EWQELPVITT PEAALAEDAA PIHNGGNLLK QSTMSTGNVQ QTIDAADYQV QGHYQTPVIQ 180
  181 HCHMESVTSL AWMEDDSRIT IVSSTQIPHI VRRVVGQALD IPWSCVRVIK PFVGGGFGNK 240
  241 QDVLEEPMAA FLTSKLGGIP VKVSLSREEC FLATRTRHAF TIDGQMGVNR DGTLKGYSLD 300
  301 VLSNTGAYAS HGHSIASAGG NKVAYLYPRC AYAYSSKTCY TNLPSAGAMR GYGAPQVVFA 360
  361 VESMLDDAAT ALGIDPVEIR LRNAAREGDA NPLTGKRIYS AGLPECLEKG RKIFEWEKRR 420
  421 AECQNQQGNL RRGVGVACFS YTSNTWPVGV EIAGARLLMN QDGTINVQSG ATEIGQGADT 480
  481 VFSQMVAETV GVPVSDVRVI STQDTDVTPF DPGAFASRQS YVAAPALRSA ALLLKEKIIA 540
  541 HAAVMLHQSA MNLTLIKGHI VLVERPEEPL MSLKDLAMDA FYHPERGGQL SAESSIKTTT 600
  601 NPPAFGCTFV DLTVDIALCK VTINRILNVH DSGHILNPLL AEGQVHGGMG MGIGWALFEE 660
  661 MIIDAKSGVV RNPNLLDYKM PTMPDLPQLE SAFVEINEPQ SAYGHKSLGE PPIIPVAAAI 720
  721 RNAVKMATGV AINTLPLTPK RLYEEFHLAG LI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1ffuB
Description: Carbon monoxide (CO) dehydrogenase molybdoprotein, N-domain; Carbon monoxide (CO) dehydrogenase molybdoprotein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
xanthine dehydrogenase activity 5.82918526117689 bayes_pls_golite062009
oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor 5.67527300272858 bayes_pls_golite062009
catalytic activity 2.08712526567445 bayes_pls_golite062009
oxidoreductase activity, acting on CH or CH2 groups 1.80290092537495 bayes_pls_golite062009
oxidoreductase activity 1.43578190064474 bayes_pls_golite062009
molybdenum ion binding 0.959122327793141 bayes_pls_golite062009
molybdopterin cofactor binding 0.63131279827553 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle