YRC Public Data Repository - Protein Structure Prediction

Protein:	VIRB6_AGRFC
Organism:	Agrobacterium tumefaciens str. C58
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VIRB6_AGRFC.

Description	E-value	Query Range	Subject Range
gi\|99036115 - gi\|99036115\|ref\|ZP_01315147.1\| hypothetical protein Wendoof_01000010 [Wolbachia endosymbiont of Dros...	181.0	[0..1]	[290..558]
gi\|15163430 - gi\|15163430\|gb\|AAK90934.1\| AGR_pTi_10p [Agrobacterium tumefaciens str. C58]	181.0	[0..1]	[295..40]
gi\|42410430, gi\|... - gi\|42520690\|ref\|NP_966605.1\| hypothetical protein WD0855 [Wolbachia endosymbiont of Drosophila melan...	181.0	[0..1]	[290..558]
gi\|3184197 - gi\|3184197\|dbj\|BAA28700.1\| virB6 [Agrobacterium tumefaciens]	179.0	[0..1]	[295..1]
gi\|86283854, gi\|... - gi\|86359752\|ref\|YP_471643.1\| transport secretion system IV, VirB6 protein [Rhizobium etli CFN 42], g...	178.0	[0..1]	[295..1]
gi\|158322266, gi... - gi\|190404470\|ref\|YP_001961101.1\| rcorf126 [Agrobacterium rhizogenes], gi\|158322266\|gb\|ABW33683.1\| rc...	178.0	[0..1]	[295..1]
gi\|58534654, gi\|... - gi\|58698824\|ref\|ZP_00373700.1\| membrane protein, putative [Wolbachia endosymbiont of Drosophila anan...	171.0	[0..1]	[291..547]
gi\|13488455, gi\|... - gi\|14028209\|dbj\|BAB54801.1\| conjugal transfer protein; TrbL [Mesorhizobium loti MAFF303099], gi\|1348...	169.0	[0..10]	[286..43]

Back

Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFTIPAPFT AIHTIFDLAF TTSLDTMLGT IQEAVSAPLV ACVTLWIIVQ GILVMRGEID  60
   61 TRGGITRVIT VTVVVALVVG QANY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [85-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HDYVVSVFEE TIPNFIQQFS GSGLPLQTIP AQLDTMFALT QAAFQRIASE IGPM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.907	a.8.1	Bacterial immunoglobulin/albumin-binding domains

Predicted Domain #3

Region A:
Residues: [139-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDQDILAFQG AQWVFYGTLW SAFGIYDAVG ILTKVLLAIG PLILTGYIFD RTRDIAAKWI  60
   61 GQLITYGLLL LLLNLVATIV ILTEATALTL MLGVITLAGT TAAKIIGLYE LDMFFLTGDA 120
  121 LIVALPAIAG NIGGSYWSGA TQSANSLYRR FAQVDRR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits