YRC Public Data Repository - Protein Structure Prediction

Protein:	mrg-1
Organism:	Caenorhabditis elegans
Length:	337 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrg-1.

Description	E-value	Query Range	Subject Range
mrg-1 - status:Confirmed UniProt:Q9XWW2 protein_id:CAA21528.1	323.0	[0..1]	[337..1]
gi\|94406757 - gi\|94406757\|ref\|XP_981969.1\| PREDICTED: similar to mortality factor 4 like 1 isoform b [Mus musculus...	277.0	[0..3]	[327..7]
MO4L1_RAT - Mortality factor 4-like protein 1 OS=Rattus norvegicus GN=Morf4l1 PE=2 SV=1	274.0	[0..3]	[327..7]
MG15_MOUSE - (P60762) Transcription factor-like protein MRG15 (MORF-related gene 15 protein) (Mortality factor 4-... gi\|114658397 - gi\|114658397\|ref\|XP_001152351.1\| PREDICTED: MORF-related gene 15 isoform 6 [Pan troglodytes] gi\|123984365, gi... - gi\|168279109\|dbj\|BAG11434.1\| mortality factor 4-like protein 1 [synthetic construct], gi\|123998323\|g... gi\|4454704, gi\|1... - gi\|8895208\|gb\|AAF80854.1\|AF167173_1 MSL3-1 protein [Homo sapiens], gi\|6841360\|gb\|AAF29033.1\|AF161546... gi\|54035370 - gb\|AAH84008.1\| Unknown (protein for MGC:98166) [Xenopus laevis] gi\|109082086 - gi\|109082086\|ref\|XP_001108662.1\| PREDICTED: similar to mortality factor 4 like 1 isoform b isoform 3...	274.0	[0..3]	[327..7]
gi\|67968852 - gi\|67968852\|dbj\|BAE00783.1\| unnamed protein product [Macaca fascicularis]	273.0	[0..3]	[327..7]
gi\|78369382, gi\|... - gi\|78369382\|ref\|NP_001030525.1\| MORF-related gene 15 [Bos taurus], gi\|74354109\|gb\|AAI02594.1\| Mortal...	273.0	[0..3]	[327..7]
gi\|84105337 - gi\|84105337\|ref\|NP_001032253.1\| mortality factor 4 like 1 isoform 2 [Gallus gallus]	271.0	[0..3]	[327..7]
MO4L1_PONAB - Mortality factor 4-like protein 1 OS=Pongo abelii GN=MORF4L1 PE=2 SV=1 MO4L1_PONPY - Mortality factor 4-like protein 1 - Pongo pygmaeus (Orangutan)	270.0	[0..3]	[327..7]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKKNFEVG ENVACIYKGK PYDAKITDIK TNSDGKELYC VHFKGWNNRY DEKIPVGEEK  60
   61 DRIFKGTASE YAEKHNAELP TTALKPKKKS LAAEAPRDDR DDTPGTSKGK KAKSVTIAPV 120
  121 MT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.522879
Match:	1wgsA
Description:	Solution Structure of the Tudor Domain from Mouse Hypothetical Protein Homologous to Histone Acetyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [123-337]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADDMKVELPK PLRKILIDDY DLVCRYFINI VPHEYSVDQI IEDYIKTIPV SNEQMRTVDD  60
   61 LLIEYEEADI KITNLALICT ARGLVDYFNV TLGSSYQLLY KFERPQYNDL VKKRAMEKGI 120
  121 DITNPTALQD SGFRPSQEYG IVHFLRMLAK LPDYLKLTQW NDHVINRIMI GVHDLIVFLN 180
  181 KNHGKYYRGS SDYQGASNDY YRRSLAADDG VGANQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.39794
Match:	2aqlA
Description:	Crystal Structure of the MRG15 MRG domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits