YRC Public Data Repository - Protein Structure Prediction

Protein:	UTS2A_CYPCA
Organism:	Cyprinus carpio
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UTS2A_CYPCA.

Description	E-value	Query Range	Subject Range
gi\|38343960 - gi\|38343960\|emb\|CAD56908.1\| urotensin II precursor [Platichthys flesus]	190.0	[0..1]	[125..1]
UTS2G_CYPCA - Prepro-urotensin II-gamma OS=Cyprinus carpio PE=1 SV=1	178.0	[0..1]	[125..1]
gi\|190336811, gi... - gi\|47086341\|ref\|NP_998013.1\| urotensin 2, alpha [Danio rerio], gi\|32140467\|gb\|AAP69834.1\| urotensin ...	171.0	[0..1]	[125..1]
gi\|61859014 - gi\|61859014\|ref\|XP_582447.1\| PREDICTED: similar to urotensin II transcript [Bos taurus]	169.0	[0..4]	[125..2]
gi\|118344610, gi... - gi\|89331013\|emb\|CAI63878.1\| urotensin II precursor [Takifugu rubripes], gi\|87116235\|emb\|CAI53670.1\| ...	168.0	[0..1]	[125..1]
UTS2_MOUSE - Urotensin-2 OS=Mus musculus GN=Uts2 PE=2 SV=1	167.0	[0..8]	[125..6]
UTS2_RAT - Urotensin-2 OS=Rattus norvegicus GN=Uts2 PE=2 SV=1	165.0	[0..8]	[125..6]
UTS2_MACMU - Urotensin-2 OS=Macaca mulatta GN=UTS2 PE=2 SV=1	164.0	[0..4]	[125..2]
gi\|114552295 - gi\|114552295\|ref\|XP_001157678.1\| PREDICTED: urotensin 2 isoform 2 [Pan troglodytes] UTS2 - urotensin 2	159.0	[0..4]	[125..2]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMCNLLLSFS VLLLSCTHLV AHPVTDTADM TYSGPDSVEE AGGVSPDDFA VSDLNDLLQR  60
   61 AAVVEYSPLL SRENIKVPGQ IPKEALRELL LEKPYRLIPP SGLWGSRRQF RKRGGGADCF 120
  121 WKYCV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.0878210954103913	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: