YRC Public Data Repository - Protein Structure Prediction

Protein:	TTDA_ECOLI
Organism:	Escherichia coli
Length:	303 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TTDA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|23105040 - ref\|ZP_00091498.1\| COG1951: Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-termina... gi\|67086112, gi\|... - gi\|67156353\|ref\|ZP_00417946.1\| Fe-S type hydro-lyases tartrate/fumarate alpha region:Fe-S type hydro...	423.0	[0..9]	[291..4]
gi\|21242212, gi\|... - gi\|21242212\|ref\|NP_641794.1\| fumarate hydratase [Xanthomonas axonopodis pv. citri str. 306], gi\|2110...	417.0	[0..9]	[293..4]
gi\|9950558, gi\|1... - gi\|9950558\|gb\|AAG07721.1\|AE004849_8 probable fumarase [Pseudomonas aeruginosa PAO1], gi\|15599529\|ref... gi\|194549987, gi... - gi\|84316825\|ref\|ZP_00965284.1\| COG1951: Tartrate dehydratase alpha subunit/Fumarate hydratase class ... gi\|218773651, gi... - gi\|218893423\|ref\|YP_002442292.1\| putative fumarase [Pseudomonas aeruginosa LESB58], gi\|218773651\|emb... gi\|254244858, gi... - gi\|84323137\|ref\|ZP_00971214.1\| COG1951: Tartrate dehydratase alpha subunit/Fumarate hydratase class ... gi\|11351312 - pir\|\|A83105 probable fumarase PA4333 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|116052367, gi... - gi\|32039544\|ref\|ZP_00137816.1\| COG1951: Tartrate dehydratase alpha subunit/Fumarate hydratase class ...	416.0	[0..9]	[294..4]
gi\|107100084 - gi\|107100084\|ref\|ZP_01364002.1\| hypothetical protein PaerPA_01001105 [Pseudomonas aeruginosa PACS2]	416.0	[0..9]	[294..4]
gi\|94413998, gi\|... - gi\|94413998\|ref\|ZP_01293867.1\| hypothetical protein PaerP_01004268 [Pseudomonas aeruginosa PA7], gi\|...	415.0	[0..9]	[300..4]
gi\|77460673, gi\|... - gi\|77460673\|ref\|YP_350180.1\| fumarase [Pseudomonas fluorescens Pf0-1], gi\|77384676\|gb\|ABA76189.1\| pu...	415.0	[0..9]	[291..4]
gi\|84367813, gi\|... - gi\|84623873\|ref\|YP_451245.1\| fumarate hydratase [Xanthomonas oryzae pv. oryzae MAFF 311018], gi\|8436... gi\|58426553, gi\|... - gi\|58581959\|ref\|YP_200975.1\| fumarate hydratase [Xanthomonas oryzae pv. oryzae KACC10331], gi\|584265... gi\|188576440, gi... - gi\|188576440\|ref\|YP_001913369.1\| fumarate hydratase [Xanthomonas oryzae pv. oryzae PXO99A], gi\|18852...	415.0	[0..9]	[293..4]
gi\|87121376, gi\|... - gi\|87121376\|ref\|ZP_01077265.1\| probable fumarase [Marinomonas sp. MED121], gi\|86163219\|gb\|EAQ64495.1...	415.0	[0..12]	[291..7]
gi\|71733769, gi\|... - gi\|71733769\|ref\|YP_276169.1\| fumarate hydratase, class I, putative [Pseudomonas syringae pv. phaseol...	414.0	[0..9]	[291..4]
gi\|17428973 - gi\|17428973\|emb\|CAD15657.1\| probable fumarate hydratase protein [Ralstonia solanacearum GMI1000] gi\|17546674 - gi\|17546674\|ref\|NP_520076.1\| fumarate hydratase protein [Ralstonia solanacearum GMI1000]	414.0	[0..12]	[292..7]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSESNKQQA VNKLTEIVAN FTAMISTRMP DDVVDKLKQL KDAETSSMGK IIYHTMFDNM  60
   61 QKAIDLNRPA CQDTGEIMFF VKVGSRFPLL GELQSILKQA VEEATVK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [108-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APLRHNAVEI FDEVNTGKNT GSGVPWVTWD IIPDNDDAEI EVYMAGGGCT LPGRSKVLMP  60
   61 SEGYEGVVKF VFENISTLAV NACPPVLVGV GIATSVETAA VLSRKAILRP IGSRHPNPKA 120
  121 AELELRLEEG LNRLGIGPQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [247-303]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLTGNSSVMG VHIESAARHP STIGVAVSTG CWAHRRGTLL VHADLTFENL SHTRSAL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.740	0.005	iron ion binding	d.39.1	Dynein light chain 8 (DLC8)
View	Download	0.818	N/A	N/A	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.794	N/A	N/A	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.785	N/A	N/A	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.694	N/A	N/A	d.17.2	Copper amine oxidase, domains 1 and 2

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits