YRC Public Data Repository - Protein Structure Prediction

Protein:	TTDA_ECOLI
Organism:	Escherichia coli
Length:	303 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TTDA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|23105040 - ref\|ZP_00091498.1\| COG1951: Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-termina... gi\|67086112, gi\|... - gi\|67156353\|ref\|ZP_00417946.1\| Fe-S type hydro-lyases tartrate/fumarate alpha region:Fe-S type hydro...	423.0	[0..9]	[291..4]
gi\|21242212, gi\|... - gi\|21242212\|ref\|NP_641794.1\| fumarate hydratase [Xanthomonas axonopodis pv. citri str. 306], gi\|2110...	417.0	[0..9]	[293..4]
gi\|9950558, gi\|1... - gi\|9950558\|gb\|AAG07721.1\|AE004849_8 probable fumarase [Pseudomonas aeruginosa PAO1], gi\|15599529\|ref... gi\|194549987, gi... - gi\|84316825\|ref\|ZP_00965284.1\| COG1951: Tartrate dehydratase alpha subunit/Fumarate hydratase class ... gi\|218773651, gi... - gi\|218893423\|ref\|YP_002442292.1\| putative fumarase [Pseudomonas aeruginosa LESB58], gi\|218773651\|emb... gi\|254244858, gi... - gi\|84323137\|ref\|ZP_00971214.1\| COG1951: Tartrate dehydratase alpha subunit/Fumarate hydratase class ... gi\|11351312 - pir\|\|A83105 probable fumarase PA4333 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|116052367, gi... - gi\|32039544\|ref\|ZP_00137816.1\| COG1951: Tartrate dehydratase alpha subunit/Fumarate hydratase class ...	416.0	[0..9]	[294..4]
gi\|107100084 - gi\|107100084\|ref\|ZP_01364002.1\| hypothetical protein PaerPA_01001105 [Pseudomonas aeruginosa PACS2]	416.0	[0..9]	[294..4]
gi\|94413998, gi\|... - gi\|94413998\|ref\|ZP_01293867.1\| hypothetical protein PaerP_01004268 [Pseudomonas aeruginosa PA7], gi\|...	415.0	[0..9]	[300..4]
gi\|77460673, gi\|... - gi\|77460673\|ref\|YP_350180.1\| fumarase [Pseudomonas fluorescens Pf0-1], gi\|77384676\|gb\|ABA76189.1\| pu...	415.0	[0..9]	[291..4]
gi\|84367813, gi\|... - gi\|84623873\|ref\|YP_451245.1\| fumarate hydratase [Xanthomonas oryzae pv. oryzae MAFF 311018], gi\|8436... gi\|58426553, gi\|... - gi\|58581959\|ref\|YP_200975.1\| fumarate hydratase [Xanthomonas oryzae pv. oryzae KACC10331], gi\|584265... gi\|188576440, gi... - gi\|188576440\|ref\|YP_001913369.1\| fumarate hydratase [Xanthomonas oryzae pv. oryzae PXO99A], gi\|18852...	415.0	[0..9]	[293..4]
gi\|87121376, gi\|... - gi\|87121376\|ref\|ZP_01077265.1\| probable fumarase [Marinomonas sp. MED121], gi\|86163219\|gb\|EAQ64495.1...	415.0	[0..12]	[291..7]
gi\|71733769, gi\|... - gi\|71733769\|ref\|YP_276169.1\| fumarate hydratase, class I, putative [Pseudomonas syringae pv. phaseol...	414.0	[0..9]	[291..4]
gi\|17428973 - gi\|17428973\|emb\|CAD15657.1\| probable fumarate hydratase protein [Ralstonia solanacearum GMI1000] gi\|17546674 - gi\|17546674\|ref\|NP_520076.1\| fumarate hydratase protein [Ralstonia solanacearum GMI1000]	414.0	[0..12]	[292..7]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSESNKQQA VNKLTEIVAN FTAMISTRMP DDVVDKLKQL KDAETSSMGK IIYHTMFDNM  60
   61 QKAIDLNRPA CQDTGEIMFF VKVGSRFPLL GELQSILKQA VEEATVK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [108-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APLRHNAVEI FDEVNTGKNT GSGVPWVTWD IIPDNDDAEI EVYMAGGGCT LPGRSKVLMP  60
   61 SEGYEGVVKF VFENISTLAV NACPPVLVGV GIATSVETAA VLSRKAILRP IGSRHPNPKA 120
  121 AELELRLEEG LNRLGIGPQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [247-303]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLTGNSSVMG VHIESAARHP STIGVAVSTG CWAHRRGTLL VHADLTFENL SHTRSAL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.818	N/A	N/A	d.17.2	Copper amine oxidase, domains 1 and 2

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits