YRC Public Data Repository - Protein Structure Prediction

Protein:	tag-296
Organism:	Caenorhabditis elegans
Length:	281 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tag-296.

Description	E-value	Query Range	Subject Range
CE33286 - WBGene00018632 locus:tag-296 status:Partially_confirmed TR:Q86LT5 protein_id:AAO26011.1	332.0	[0..1]	[281..1]
gi\|109066999 - gi\|109066999\|ref\|XP_001086395.1\| PREDICTED: similar to pleckstrin homology domain containing, family...	241.0	[0..57]	[279..291]
gi\|114612637 - gi\|114612637\|ref\|XP_527709.2\| PREDICTED: pleckstrin homology domain containing, family A (phosphoino...	241.0	[0..57]	[279..291]
PKHA8_BOVIN - Pleckstrin homology domain-containing family A member 8 OS=Bos taurus GN=PLEKHA8 PE=3 SV=2	235.0	[0..53]	[279..288]
gi\|73976553 - gi\|73976553\|ref\|XP_539498.2\| PREDICTED: similar to pleckstrin homology domain containing, family A (...	233.0	[0..67]	[279..554]
PKHA8_RAT - Pleckstrin homology domain-containing family A member 8 OS=Rattus norvegicus GN=Plekha8 PE=1 SV=1	231.0	[0..57]	[279..292]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLNHALTMN QQFKIKTTAF IIHLMKVYRL LSLFSLYFCD FFFVKIDKIP KFQLKMTEDT  60
   61 ASPFCIKLVA TQMKKLSTD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [80-281]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VIIVEKSDVE NCPEVTPDDV ELLTFVEVYE ELCKFIGMLG KIFEFVEKDV REKIDLLKEL  60
   61 HTANPEGYKT VVALVHSEKP MEKNGKESGA VAILHLNRAL EFIVEFMYAA VAATNDDSIP 120
  121 KICKECYDGT LAKHHPWIIR TAVKVAVYTL PTREKMLDYL KAGSVTDESL IRVLIDDVVS 180
  181 HGKIVHSRIN TIYTVHELHK IA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.045757
Match:	1tfjA
Description:	Crystal structure of Bovine Glycolipid transfer protein in complex with a fatty acid
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits